KEGG   Agrobacterium tumefaciens Ach5: Ach5_27160
Entry
Ach5_27160        CDS       T03816                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
atf  Agrobacterium tumefaciens Ach5
Pathway
atf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ach5_27160 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atf03021]
    Ach5_27160 (rho)
   03019 Messenger RNA biogenesis [BR:atf03019]
    Ach5_27160 (rho)
Transcription machinery [BR:atf03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Ach5_27160 (rho)
Messenger RNA biogenesis [BR:atf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Ach5_27160 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT DUF6360 Spore_III_AA AAA
Other DBs
NCBI-ProteinID: AKC08491
UniProt: A0AA86KSR7
Position
circular:complement(2830655..2831920)
AA seq 421 aa
MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELELPTSKDLSSRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
LDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKTNSDFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagcaaatcgcctaccgacttgctaactttt
gctgaatccctggaagttgaaaatgcgagcaccatgcgcaagcaggagcttatgttcgca
atcctcaaggttctcgcgagccaggacatcgaaattatcggcgaaggcgtcgttgaagtc
ctgcaggacggtttcggttttctacggtccgcaaatgcaaattatctgccgggtccggac
gatatctacatttcgccctcgcaaattcgccgtttctctctgaagaccggcgatactgtc
gaggggccgatccgtggacccaaggaaggcgaacgttatttcgcgcttctcaaagtcaac
acgatcaattttgacgatcctgaaaagatccgtcacaaggttcacttcgataacctgacg
ccgctttatccgaatgagcggttcaagatggagctggagcttccgacatcgaaggatctg
tcgtcgcgtgtgatcgatctggtcgcgccacttggcaagggccagcgtggattgatcgtc
gcgccgccgcgtaccggtaaaactgttctcttgcagaacatcgcgcattccatcacggct
aaccatcctgaatgttacctgatcgttcttctgatcgacgaacgtccggaagaagtcacc
gacatgcagcgctcggtcaagggtgaggtggtgtcgtcaaccttcgacgaaccagctgta
cgccacgtccaggtggccgaaatggtcatcgaaaaggcgaagcgccttgtcgaacatggc
cgcgacgtcgttatcctgctcgattccatcacccgcctcggccgagcttataacacggtc
gttccgtcttccggcaaggtcctgaccggtggtgtggatgccaacgcgttgcagcggccg
aagcgtttcttcggtgccgcacgtaacatcgaagaaggtggttcgctgacgattatcgcg
accgcgctgatcgacaccggcagccgcatggacgaagtcatctttgaagaattcaagggt
acgggtaactcggaaatcgtgcttgaccgtaaggtcgctgacaagcgtatcttcccggcg
ctcgatattctcaagtccggtacgcgtaaggaagacctgctcgtgccgcgtcaggatctc
cagaagattttcgtgcttcgccgcattctcgcgccgatgggaacgatggatgccatcgag
ttcttgatcgacaagttgaagcagaccaagaccaattcggatttcttcgaatcgatgaat
acctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system