KEGG   Arabidopsis thaliana (thale cress): AT1G31500
Entry
AT1G31500         CDS       T00041                                 
Name
(RefSeq) DNAse I-like superfamily protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT1G31500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G31500
Enzymes [BR:ath01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     AT1G31500
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AT1G31500
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     AT1G31500
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-GeneID: 840040
NCBI-ProteinID: NP_001077640
TAIR: AT1G31500
UniProt: A8MS41
Position
1:complement(11273573..11276636)
AA seq 417 aa
MFSSTTLHHLPRPNLLLPRKVISRRMSTNPAIEPKVRKFESVEGVDIGSRNKSDGFFAIP
LYLSKLVALYNCISLSRIGTSNENFVFSGIRFRLVSYNILAQVYVKSALLPHSPPACLKW
KARSHAILSVLKNLQADFFCLQEVDEYDSFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFY
KPSCAELVTKERIEYNDLVDSIKADSVSCSEQKIETSNEGKDSRKDSRDLNDPLVRLKRD
CVGIMAAFRINKPFQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDEFECT
PSLLLAGDFNSIPGDMVYSYLVSGNAKPTETIEEEEAPVPLSSVYEVTRGEPKFTNCTPG
FTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHHHPSDHLPIGAEFEIRRE
NT seq 1254 nt   +upstreamnt  +downstreamnt
atgtttagttctacaactctgcatcatcttcctcgtccgaatcttcttcttcccaggaaa
gttatttcgagaagaatgagtacgaatcctgcaattgaaccaaaagttcgcaaatttgaa
tctgttgaaggagttgatattggttcaagaaataaatccgatggtttttttgctattcct
ctttacttatcaaagcttgtggctttatataactgtataagtttaagtagaattggtact
agtaatgagaattttgtgttttcaggtatcagattccgtcttgtttcatataacatatta
gctcaggtttatgtgaagagtgcacttctcccacactctccacctgcctgtctcaaatgg
aaagctcgttcacatgcaattctcagcgttctcaaaaatctccaggctgatttcttttgt
ctgcaggaagtagatgagtacgatagcttttacagaaataacatggactctctgggatat
tctgggatttatattcagagaaccggccagaggaagcgtgatggttgtgcaatcttctac
aagccaagctgtgcagagttagtcacaaaggaacggatcgaatataatgatcttgtggac
tcaataaaagcagatagtgtttcctgcagcgaacagaagattgagacatccaacgaagga
aaagattctcgaaaagacagtcgtgaccttaatgatccactagtgagactaaaacgtgat
tgcgttggaataatggctgcttttaggatcaacaagccgtttcagcatatcgttatcgtg
gcaaacacacatctttactgggaccctgaattggctgatgtcaagcttgctcaagccaag
tatctactgtcacgactagctcagttcaaaacactaatatcagatgaatttgagtgcaca
ccttcattgctactagctggcgacttcaattcaattcctggggatatggtttatagttac
ctagtatcgggtaatgctaaacccacagagaccatagaagaagaagaagctccagttcct
ctgtctagtgtctatgaagtcacaagaggagagcctaagttcacaaattgcactcctggc
ttcacaaacacacttgactacatcttcatctctccttcagacttcattaaacctgtgagt
atccttcaactacctgagccggattctccagatgttgtcggtttcttaccgaatcatcat
cacccgagtgatcatttacctataggagctgagtttgagattcgtcgggaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (1)   
   Pfam (1)   
All databases (53)   

Download RDF
DBGET integrated database retrieval system