KEGG   Arabidopsis thaliana (thale cress): AT2G41500
Entry
AT2G41500         CDS       T00041                                 
Symbol
LIS
Name
(RefSeq) WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT2G41500 (LIS)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT2G41500 (LIS)
Spliceosome [BR:ath03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    AT2G41500 (LIS)
SSDB
Motif
Pfam: WD40 NBCH_WD40 PRP4 ANAPC4_WD40 eIF2A WD40_like
Other DBs
NCBI-GeneID: 818748
NCBI-ProteinID: NP_001324961
TAIR: AT2G41500
UniProt: O22212 A0A178VMW2
Position
2:complement(17304130..17307426)
AA seq 554 aa
MEPNKDDNVSLAATAQISAPPVLQDASSLPGFSAIPPVVPPSFPPPMAPIPMMPHPPVAR
PPTFRPPVSQNGGVKTSDSDSESDDEHIEISEESKQVRERQEKALQDLLVKRRAAAMAVP
TNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLTRYDINGQLDKLVKDHEEDVTPKEE
VDDEVLEYPFFTEGPKELREARIEIAKFSVKRAAVRIQRAKRRRDDPDEDMDAETKWALK
HAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKER
ATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYD
KTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQ
GHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYF
LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGN
DDEDEEKETMDIDL
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggaacccaacaaggatgataatgtttcattagcagcaacagctcaaatttcagcacct
ccagttctacaagatgcctcgtctctgccaggtttctctgccattccacctgtggttcct
ccttcttttcccccaccaatggctccaatacctatgatgccacatcctccagttgcccgc
ccacctacttttaggccacctgtttcacaaaatggtggagtgaaaaccagtgactcggat
tcggaatcagatgatgaacatattgagatatctgaagagagtaagcaggtcagagaaaga
caggaaaaggcattgcaagatttgttggtaaagcgtcgtgctgctgctatggcagttcca
acaaatgacaaagctgttagggaccgacttagacgacttggggagcccattactctattt
ggagaacaggaaatggagagacgagctaggctgactcagctgttgactaggtatgatatc
aatgggcaattggataaactggttaaagatcacgaagaagatgtgactccaaaagaggaa
gtagatgatgaagttcttgaataccccttttttaccgagggtccaaaggaacttagagag
gctagaatagaaattgccaagttttctgtcaagagagctgctgtcaggattcagcgtgca
aagcggcggagggatgatccagatgaagatatggatgcagagactaagtgggctttaaag
catgctaaacacatggcccttgattgcagtaattttggagatgatcgtcctcttaccggc
tgctccttctcacgcgatggaaagatacttgccacatgttctctgagtggagttactaaa
ttgtgggagatgcctcaagttacaaacacgattgctgtcttgaaggatcacaaagaacgt
gcaactgatgtagtgttctccccagtggatgattgtctagcgactgcttctgctgatcga
actgcaaagctgtggaaaactgatggaacactcctacaaacgtttgaaggtcatttggat
cgtctggcacgtgttgctttccacccatcagggaaatacctgggaactacaagctatgac
aagacgtggagattgtgggatataaacacaggagcagaactgcttttgcaagaaggccat
agccgcagtgtctacggaattgcatttcaacaagatggagcattagcagcttcttgtggg
cttgattcactcgcacgagtttgggatctccgcactggtaggagtattcttgtcttccaa
ggacacatcaaaccggttttctccgtgaatttctctcctaatggttatcacttggcatct
ggtggggaggataatcaatgccgtatttgggatctaagaatgagaaagtcattgtacatt
ataccagctcatgctaaccttgtgtctcaagtgaagtatgagccacaagaaggctacttt
ctggccactgcctcatacgacatgaaagtcaatatatggtcaggaagagatttctcgctc
gttaaaagcttagcagggcatgagtcaaaagtcgcctctctagatatcacagcagatagc
tcgtgtatcgctactgtatcacatgatcgcaccatcaagctatggacaagcagtggaaat
gatgatgaagacgaagagaaagaaacaatggacatagatctctag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (37)   

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