KEGG   Arabidopsis thaliana (thale cress): AT3G17740
Entry
AT3G17740         CDS       T00041                                 
Name
(RefSeq) uncharacterized protein
  KO
K26109  nuclear exosome regulator NRDE2
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G17740
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     AT3G17740
SSDB
Motif
Pfam: NRDE-2
Other DBs
NCBI-GeneID: 821042
NCBI-ProteinID: NP_188401
TAIR: AT3G17740
UniProt: Q9LSH4
Position
3:complement(6067684..6072856)
AA seq 1149 aa
MSNTPEDGDGAQVTTGGLFPVFPTSANSISAISNAPQWLRNASFTTDLSVINAAASTAPS
SSEVEAGDDEDEEGGADGNIGLANQARVYNLVEEEGSLESDDDKVKRKREKKKKRKSDNA
SDESRSRKSDEYYSKPVKDYYLDTRPDPDNLAYGSIYRMNVPRYKLDNSQRVPGSGSLRF
YLRNRRSSMLDTEIDIDSLEGRAKSDTRYWYAKHAAMERNKNFKRIRLSAASEAVDSSFD
NFIPLEEDVTVPESDEEDVLSKDSMIGASWEDEVLNKTREFNRVTRERPHDAKAWLAFAD
FQDKVSSMQSQKGVRLQTLEKKISILEKAFELNPDSEELLLALLKAYRSRDNADVLISRW
EKALMQNSASYKLWREFLCVVQGEFSRFKVSEVRRLYSYAIQALSSACSKRHRQVDTTSE
PLDSAAIQQELVLVDMLVSLCRFEWQAGYQELATALLQAEVEFSIFSPSLLLTEQSKLRL
FEHFWSSNGARVGEEGAFGWLLWLEKEEENRQKILKEESSDDNEVGGWTGWTEQVSGRNG
DDIASANTGEVDVDRKGLDEEMEDENSKPEDDTEAMLKLLGIDVNTAASDEVKDTSTWVK
WFEEEVSRDHSQWMPTRKAGEFSSVEGMGEGEDEEQLSSVVLYEDINGYLFSLRSKEARL
SLVYQFIDFFGAHISPWTSSNSLSWSEKISSLETFSDSMLENLRSVHECLSKSDSANCFS
LGSLLGGSCDLSMRTEMMKFLRNAILLCLNVFPRNYILEEAVLVAEELFVTNMKTCEVAT
MPCQALAKRLLKSDRQDLLLCGVYAQREAASGNMKHARRVFDMALTSICGLPKELQCNTP
LLCLWYAESEVANSSGSGRDTESSSRAMHILCYLGSGLAYSPYTSQSSSMQILRARQGFR
EKLKKIQSTWSHGVTDDQSAALVCSAALFEELTNDLPGALEILEHMFSSVLPGRKSQSHQ
LELLFNYYVRMLQRHQDDLTLSQLWKPISEGLQLYPLNPELYRALVDICNHRMTSHKLRM
MFDDYSRKNSSVVVWLFALSYELSKGGSSHRIRGLFERALAQDTQNNSVILWRCYIAYEI
DIADNPSAARRIYFRAINACPWSKKLWLDGFGKLGSVLTAKEMSDLQEVMRDKELNIRTD
IYEILLMQG
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgtcgaatacaccagaagacggcgacggagcacaggtaactacaggcggcttgttcccc
gtcttccctacttcggcgaactccatctcagctatttcgaatgctcctcaatggcttcgc
aacgctagcttcactacggatctctctgtcatcaacgctgccgcttcgacggctccttcc
tcatccgaggtcgaggctggagacgacgaagatgaagaaggaggagctgatggaaatatc
ggtttagctaatcaggctagggtttataatttggttgaagaagaagggtctttggagtct
gatgacgacaaggtaaagaggaagcgagagaaaaagaagaaacggaagagtgataatgct
tcggatgaatctcgttctcgtaaatctgatgaatactattcgaaacctgtgaaggattat
tacttggacactcgtcctgatccagataatctggcttatggctctatttacaggatgaat
gttcctcgttataaacttgacaattctcagagagttccagggtcaggttctctgaggttt
tatttgcggaatcgacgtagttctatgcttgacacagagattgatattgattctttggag
gggagagcaaagtctgatacccgatactggtatgcaaaacatgctgccatggaacgcaac
aagaatttcaagcgtattcgtttatctgctgcaagtgaagctgtggattcttcctttgat
aatttcattccactggaggaagacgtgactgttccagaaagtgacgaagaagatgtttta
tcaaaggactcaatgattggagcatcatgggaggatgaagtgctgaataaaacacgggag
ttcaacagagtgacgagagaacgtccccatgatgcaaaggcatggctggcatttgctgat
tttcaagacaaggtttcaagtatgcaatctcagaaaggagttcgcctgcagactttagag
aaaaagattagtatacttgagaaggcttttgagctgaacccagatagcgaagaactgttg
cttgctctgctcaaggcataccgaagcagagacaacgctgatgtactaatcagtaggtgg
gaaaaggcacttatgcagaattccgcaagctacaaattatggagggagtttttatgtgtt
gttcaaggggagttctccagattcaaagtatcagaagtgaggaggctgtattcttatgcg
atccaggctctttcttctgcttgcagcaagcgacataggcaggtggatacaacatctgaa
ccattggattctgctgccatccaacaggaactcgttctagtcgatatgctagttagcctc
tgcaggtttgagtggcaggctggttaccaggagctggccacagcgttacttcaagccgaa
gtggaatttagcatcttttctccatctttgttgctaactgaacagagtaaattacgactg
tttgagcacttttggagcagtaatggtgctagagttggagaagaaggagcttttggatgg
ttattgtggctggagaaagaggaggaaaacaggcagaaaattttgaaagaagaatcctct
gatgacaatgaagtaggtggttggacaggttggacagaacaggtctcaggtagaaatgga
gatgatattgcttcagctaacactggagaggtcgatgttgatcggaagggtctggatgag
gaaatggaagacgagaatagcaaacctgaagatgacaccgaagctatgctgaaattattg
ggcattgatgtcaatactgcggccagtgatgaggttaaagatacatcaacttgggttaaa
tggtttgaagaagaggtttctcgagatcacagtcaatggatgcctactcggaaagctggt
gaattctccagtgttgagggaatgggtgagggagaagatgaagagcaactctcaagtgtt
gtactatatgaagatataaatggatatctattttccttacgttcaaaggaggcccgctta
tctctggtataccagttcattgatttcttcggtgcacatatctccccatggacttccagc
aacagtttgtcgtggagtgagaaaataagtagccttgaaacattttcagattccatgtta
gaaaacttgagaagtgttcatgaatgtttgtcgaaatcagatagtgccaactgtttcagc
ttgggatctcttctaggtggcagctgtgacttatctatgcggactgagatgatgaagttt
ctccgcaatgccatcttgctttgtctaaatgttttcccgcgaaattacattctcgaagaa
gctgtgcttgttgcagaagaactatttgtaacaaatatgaaaacatgtgaggtagcaact
atgccatgccaagctttggccaaacgtctcctgaaaagtgaccggcaggatctactactt
tgtggagtttatgcacagagagaagctgcttctggaaatatgaaacatgcaaggcgagtc
ttcgacatggcactgacttctatctgtggcctccctaaggaattacagtgtaacactcct
ttgctatgtttatggtatgctgaatcggaagtagccaatagtagcggcagtggtagggat
acagaatcatcatctcgtgctatgcatattctgtgctacctgggaagtggtctagcttat
agtccttatacttcccagtcttcaagcatgcaaattcttagagcacgccaggggttcaga
gagaagcttaagaagatacaatcaacatggtctcatggtgtcacagatgatcaatcagca
gcgcttgtttgttcggcagctctatttgaggagttaacaaatgaccttcctggtgctctt
gagatcttagagcacatgttcagttctgttcttccaggaagaaaaagtcaaagtcatcaa
cttgaactcttgttcaattattatgtgagaatgcttcagagacaccaggacgatctaact
ttgtcacaactttggaagcccatatcagagggactgcaactgtatcctctcaatcctgaa
ctttatcgagctttggtggacatttgtaatcaccggatgacatcccataaactgagaatg
atgttcgatgactactcccgcaagaattcgtctgtcgttgtttggctatttgcactttct
tatgaattgagtaaaggaggctcatcacacagaatccgcggattgtttgaaagggcattg
gcacaagatacacaaaacaactcagttattctatggcgttgctacatagcatatgagatc
gacatcgcggacaatccatcagcagctagaaggatttatttccgagctataaatgcatgc
ccatggtcgaagaaactatggctcgatgggtttgggaagctgggatcagtcttgacggca
aaagagatgtcagatttacaagaagtgatgcgggacaaggaactgaacattaggacagat
atctacgagattctgcttatgcagggatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (34)   

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