KEGG   Arabidopsis thaliana (thale cress): AT5G08565
Entry
AT5G08565         CDS       T00041                                 
Name
(RefSeq) Transcription initiation Spt4-like protein
  KO
K15171  transcription elongation factor SPT4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    AT5G08565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT5G08565
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT5G08565
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     AT5G08565
  RNA polymerase I system
     AT5G08565
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     AT5G08565
SSDB
Motif
Pfam: Spt4
Other DBs
NCBI-GeneID: 830757
NCBI-ProteinID: NP_568201
TAIR: AT5G08565
UniProt: Q8LCQ3 A0A178UPE0
Position
5:2775897..2777474
AA seq 116 aa
MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN
GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI
NT seq 351 nt   +upstreamnt  +downstreamnt
atgggagaagcgcctgcccagattccgacgagtttcggccacgagcttagggcttgtctt
cgatgccgcctcgtcaagacctacgatcagtttagggattctggatgcgagaactgtcct
ttcttcaaaatagaagacgatcatgaacgcatcgtcgatgttacaactcccaacttcaat
ggtataatctctatgatggatccacgcagaagttgggcagcaagatggttaagaattggg
aagtttgctcctggttgctacactcttgctgtctcagaggcactcccagaggaaatgcag
ttcatatgccaacaagcacgggtgcagtacgttccacccaaacgtatttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (24)   

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