KEGG   Arabidopsis thaliana (thale cress): AT5G46400
Entry
AT5G46400         CDS       T00041                                 
Symbol
PRP39-2
Name
(RefSeq) Tetratricopeptide repeat (TPR)-like superfamily protein
  KO
K13217  pre-mRNA-processing factor 39
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G46400 (PRP39-2)
Spliceosome [BR:ath03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    AT5G46400 (PRP39-2)
SSDB
Motif
Pfam: TPR_14 DUF1748
Other DBs
NCBI-GeneID: 834683
NCBI-ProteinID: NP_199452
TAIR: AT5G46400
UniProt: F4KHG8
Position
5:18819933..18824782
AA seq 1036 aa
MVTTEVRTAVSDKEPLQRSPELDSSTDFLDNDRLKETFSSGALDFDEWTLLISEIETTSF
PDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVWL
DYCAFAVAAYEDPHDVSRLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLRT
LKYPSKKLDLYYKNFRKIAASLKEKIKCRIDVNGDLSSDPMEEDLVHTRHTDEEISIVVR
ELMGPSSSSAVSKALHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLDTNQLDN
WHAYLSFGETYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGRELANFALARASQ
TFVKSASVIHLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKANMEKRLGNFEA
AVTTYREALNKTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPHCKLL
LEELMRLLMMHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEISNLYMEFIDLSGTI
HDVRKALGRHIKLFPHSARAKLRGSRPSGNLFRELIQRREKTRERLNQDLLTNKGISSIV
DSPPKEKKESSLDSYGTQSKDAVRADYVNTEPNQGCLTSGHLVEGNDNVIERETLCESQS
DLSMGLKANEGGKRSHEVSLPIQASPEHGFVTKQAHFSSNSVDTVKSDAIVIQPSGSQSP
QSYQSQESLRQTGRNRYHRRDLNQMHRDSKPRSQERPPQMPYSPVGTGREILGQHMAFTH
QDNRVALQSSTSQNPQNQFQNSALQMHPVVQTSNAYPQSQIHGQHMIVSPPESQNPQNQC
QNSTSQVQTSFAYPQTQIPQNPVQSNYQQEGQMQSHEAYNQMWQQYYYSYYYYQQQQQLM
SEQPQPNQNPQPQLDQNLVQLLSKQYQSQAKTQYLQPQQVEQVNTQQQSQEPQNQQQIQF
QQQQQQQEWFQQQQQWQQQQYLLYIQQQQLQGEAKGDEQRLSMPQGSTTNSDIQKSQESG
AVNEANLSSDTSISSI
NT seq 3111 nt   +upstreamnt  +downstreamnt
atggtgacgacggaggttaggaccgccgtctccgataaggaaccattgcaacggtctcca
gaattagacagctccactgatttccttgacaacgatagattaaaagaaacattctccagt
ggagctcttgattttgatgaatggactttgttaatctccgaaatagagacgacttcgttc
cctgatgatattgagaagctatgtttagtttatgatgctttcttgttggagtttccattg
tgtcatggctattggaggaaatatgcttaccataagataaagttatgcactttagaagat
gctgttgaagttttcgaacgagcagtacaagcagctacttactctgtagctgtatggctc
gactattgtgctttcgctgttgctgcttatgaagatcctcatgatgttagtagattattt
gagagggggctttcatttattggaaaagattattcttgctgcactctttgggacaaatat
atagaatatcttttgggtcagcagcaatggagttcactggctaatgtatatctccggacc
ttgaaatatccatccaaaaagttggatctctattacaaaaacttcaggaagattgcagct
tctttgaaagagaagattaaatgtagaatagatgttaacggagacctttcttcagacccc
atggaagaagatttggtccatacacgtcacactgatgaggagatctctattgttgtaaga
gaattgatgggtccttcctctagctcagctgtgtcaaaagcactgcatacatatttgtca
attggagaacagttctatcaagactcacggcagttgatggagaaaataagctgctttgag
acacaaatccgcaggccttattttcatgtaaaaccattggatactaatcagctcgacaat
tggcatgcatatttgagcttcggtgaaacatatggggactttgactgggctatcaatctc
tatgagagatgcttaataccatgcgctaattacaccgagttctggttccgctatgtggat
tttgtagaaagcaagggtggaagggagctagcaaactttgcattggctcgagcgtcacaa
acttttgtcaagagtgcttctgttatccatctattcaatgcaagattcaaagaacatgtt
ggagatgcatctgctgcttcagttgctctgtctcgatgtggtgaggaacttggttttggt
tttgttgaaaatgtaactaagaaggctaacatggaaaagcgcctgggtaattttgaagct
gctgttaccacgtatagagaagctctgaataaaacgctcattggaaaagaaaatttggaa
accaccgcccggctgtatgttcaattttctcgcctcaagtacgtgattacaaatagtgct
gatgatgcagctcagattctgttagaaggcaatgagaatgttcctcactgcaaattactt
cttgaggaacttatgagactcttgatgatgcatggagggtctcgacaagtggatttgtta
gatcctatcatagataaggaattatctcatcaggcagattcctccgatggtctaagcgca
gaggacaaagaagaaatatcaaatttatacatggagtttattgatctctctggaaccatc
catgatgtgaggaaggctttgggtcgacacataaaattattcccacattctgctagagcc
aagttacgtgggtcccgtccttcaggaaatttatttagagagttgattcagagaagagag
aagactcgagagcgcttgaatcaggacctattaacaaacaaaggcattagcagtatagtc
gattcaccaccaaaagaaaagaaagagtcatctctagactcttatggtacccaatctaaa
gatgctgtacgggctgactatgtaaacactgagcctaatcagggctgtctgacttctgga
catctagttgaaggaaacgataatgttattgagagggagactttgtgtgagtcacagagc
gatctgtccatgggattaaaagccaatgaaggtggtaaacgctctcatgaagttagccta
ccgatccaagcctcaccagaacatggttttgtcactaaacaagctcacttctcgtccaat
tcagtagatactgtgaagtcagatgctatagtgatccaacctagtggctcacagagtccc
caaagttaccaaagtcaagagtctctcaggcaaactggtcggaacaggtaccacagaaga
gatttaaaccagatgcacagagattcaaaacctcgttctcaagagagacctcctcagatg
ccatattctccagtcggaactggtcgtgaaattcttggtcagcacatggcttttactcat
caagacaatcgagtagcgctacaaagctcaacctctcagaatccgcaaaaccaatttcag
aactctgcacttcagatgcatcctgtggttcaaacatccaatgcttatcctcaatctcag
atacatggtcagcacatgattgtatcccctccagagtcacagaatccgcagaaccaatgt
caaaactctacatctcaggttcaaacatcctttgcttatcctcaaactcagattcctcag
aatccagtgcagagtaactaccaacaagaaggtcagatgcagagtcatgaagcttataac
cagatgtggcaacagtattattatagctattattactatcagcaacagcaacagcttatg
tctgaacagcctcaaccaaatcagaaccctcagccacaactagatcagaatcttgtgcaa
cttctctccaaacagtaccagtctcaagccaaaactcagtatctacaaccacaacaggtg
gaacaggtcaatacacagcaacagagtcaagaaccacaaaatcagcagcaaattcagttc
cagcaacaacaacaacaacaagagtggttccaacagcaacagcaatggcaacaacagcag
tatcttctctatattcagcaacagcagttgcaaggagaagcaaaaggcgatgaacaaaga
ctctctatgccgcagggttccacaacaaacagtgatattcaaaagagtcaagaatctgga
gcagtcaatgaagcaaatctatcttctgacacttccatcagttctatatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (34)   

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