KEGG   Arabidopsis thaliana (thale cress): AT4G24490
Entry
AT4G24490         CDS       T00041                                 
Symbol
RGTA1
Name
(RefSeq) RAB geranylgeranyl transferase alpha subunit 1
  KO
K14050  geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:ath01006]
    AT4G24490 (RGTA1)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ath04131]
    AT4G24490 (RGTA1)
Enzymes [BR:ath01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.60  protein geranylgeranyltransferase type II
     AT4G24490 (RGTA1)
Prenyltransferases [BR:ath01006]
 Protein prenylation
  Rab geranylgeranyltransferase
   AT4G24490 (RGTA1)
Membrane trafficking [BR:ath04131]
 Exocytosis
  Small GTPases and associated proteins
   Rab associated proteins
    AT4G24490 (RGTA1)
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
    AT4G24490 (RGTA1)
SSDB
Motif
Pfam: PPTA LRR_4 LRR_8 MetW LRR_9 Amdase
Other DBs
NCBI-GeneID: 828551
NCBI-ProteinID: NP_001078443
TAIR: AT4G24490
UniProt: Q8VYB7
Position
4:complement(12655059..12658348)
AA seq 678 aa
MHGRPRNASKPEEEAASAAKAVQLRSLQSQFMTNHHDKIYTNEAIELSTKLLEINPEAYT
AWNYRKLAVEDRLARIEPDPNLVSAILDEELRVVESALRQNFKSYGAWHHRKWVLSKGHS
SVGNELRLLEKFQKLDSRNFHAWNYRRFVVELTNRSEQDELQYTDDMINNNFSNYSAWHN
RSVLLSSLLAQNADGFMPNIKIPEEYDFVHSAIFTEPDDQSGWFYHLWLLDQTLNVETPL
LTSSWPSHGSSIILSGAGCLSGSSSMFTTFCSESGSFPLILYFDQAVGGVSSSTVTIDSE
LKGNEGLVWEPIPNKNSQVSCVWVARLKYVSSDPCEYKVKIRVGNSPGIVSSRGYNFNAP
YEFVFTAHVHDTVEDSQEGIVSWTDGFDIWDAKSKDLNSLVTLDRLNAEMDFKWRQEAID
SEVECFGILPDSKIGKLTLARLLMAREAMVSDDAVKGVHYEEILQLYNDLMALDSSHYQY
YKDEHSKAFLHKVTSSSESLSRHLLRYRDMNNLVCLRLNNLSLSRIASVEKLLFVQMLDL
SHNELHSTEGLEAMQLLSCLNLSHNRIRSFSALDSLRHVKQLKVLDVSHNHIGKHSVDTT
RYLCSSPLSNSELGQDDVGKQNPGLVTKYWDAYCVLTDLNLKQLDIAGNEIAGEEFSSFV
LQVVPKLVWLDGQKKLGN
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgcacggtcgtccaaggaatgcttctaagccagaagaggaagcagcttcagctgctaaa
gctgttcagcttcgctctctccagtctcagtttatgacgaatcatcacgataaaatttat
accaatgaagctattgagttaagcacgaagcttctagaaatcaatccggaggcgtacacc
gcatggaactaccggaagcttgctgtggaggatcgccttgccagaattgagcctgatcca
aacttggtcagcgcaattcttgatgaagaactcagagtggtagaaagtgctttgaggcag
aatttcaagtcctatggtgcttggcatcatcgaaagtgggttttgagtaaagggcattca
tccgtagggaatgaattgagacttttggaaaaattccagaagctggattccagaaatttt
catgcttggaactatcgcaggtttgttgtagagctaaccaacagatcagaacaggatgag
ttgcagtatacagatgatatgatcaataacaatttcagcaactattctgcatggcataat
cgtagtgtacttctatcaagtttgttggcacaaaatgctgatgggtttatgccaaatata
aagattcctgaggaatatgactttgtacattcggctatttttacggaaccagatgaccaa
agtggctggttttatcatctttggcttcttgaccaaactcttaatgtggagactcctctt
ctcacttcctcatggccttcacatggttcaagtatcattctgtctggagctgggtgcttg
agtggctcttcatctatgttcactactttttgttctgagtcgggttcttttccactgatt
ctctactttgaccaagctgttggtggagtaagctcatctactgttacaattgattctgaa
ctaaaaggaaacgagggccttgtttgggaaccaattccgaacaaaaattctcaggtgtcc
tgtgtatgggttgctcgtctgaaatatgtcagttcagatccttgcgaatacaaagtgaag
atcagagttgggaactctccaggaatcgtttcttccagaggatataacttcaacgcacct
tatgagtttgtctttacagcccatgttcatgataccgtcgaagattctcaagaaggcatt
gtttcatggacggatggatttgatatttgggatgcgaagtcaaaggatttgaattctctt
gtcaccttggatcggttaaatgctgagatggattttaaatggcgtcaggaagctatagat
tctgaggttgaatgtttcggtatactgcctgacagcaaaattggaaagctcactcttgca
aggcttttgatggctcgtgaagctatggtatcggatgatgctgtcaagggtgttcactat
gaagaaatccttcagctgtataacgatttgatggcgctggattcttcacactaccagtac
tacaaggatgagcacagcaaagcttttctccacaaggtgacttcaagcagtgaatctttg
tcaagacaccttttgcgatatagggatatgaacaatcttgtatgtctacggctaaataac
ttatcactatctcggatagcctctgttgagaagttgctgtttgtccaaatgttagacctt
agtcacaatgagcttcattccactgaaggattggaggcaatgcaacttctctcttgtcta
aatctgagtcacaacagaatccggagtttttcagcgctggactctctaagacatgtgaag
cagctgaaagtgttggatgtttcacataaccacattggcaagcactcagtggacacaact
agatacctttgttcttcaccgctctctaattcagagttgggtcaggatgatgtaggaaaa
cagaatcctggattggttacgaagtactgggatgcgtattgcgtgttaacagatttgaat
ctgaaacagttagatatagcaggaaatgaaattgcaggggaggaattcagctcttttgtc
ctccaggttgtcccaaagcttgtatggctcgatggccagaagaaacttgggaattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (39)   

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