KEGG   Arabidopsis thaliana (thale cress): AT4G37930
Entry
AT4G37930         CDS       T00041                                 
Symbol
SHM1
Name
(RefSeq) serine transhydroxymethyltransferase 1
  KO
K00600  glycine hydroxymethyltransferase [EC:2.1.2.1]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath00260  Glycine, serine and threonine metabolism
ath00460  Cyanoamino acid metabolism
ath00630  Glyoxylate and dicarboxylate metabolism
ath00670  One carbon pool by folate
ath01100  Metabolic pathways
ath01110  Biosynthesis of secondary metabolites
ath01200  Carbon metabolism
ath01230  Biosynthesis of amino acids
ath01240  Biosynthesis of cofactors
Module
ath_M00532  Photorespiration
Brite
KEGG Orthology (KO) [BR:ath00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    AT4G37930 (SHM1)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    AT4G37930 (SHM1)
  09106 Metabolism of other amino acids
   00460 Cyanoamino acid metabolism
    AT4G37930 (SHM1)
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    AT4G37930 (SHM1)
Enzymes [BR:ath01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.1  glycine hydroxymethyltransferase
     AT4G37930 (SHM1)
SSDB
Motif
Pfam: SHMT Beta_elim_lyase
Other DBs
NCBI-GeneID: 829949
NCBI-ProteinID: NP_195506
TAIR: AT4G37930
UniProt: Q9SZJ5 A0A178UYX1
Position
4:complement(17831731..17835017)
AA seq 517 aa
MAMAMALRRLSSSIDKPIRPLIRSTSCYMSSLPSEAVDEKERSRVTWPKQLNAPLEEVDP
EIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM
AETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSH
GYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDY
ARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRK
GVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVL
SNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGD
VSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAME
SSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggcgatggccatggctcttcgaaggctttcttcttcaattgacaaacccattcgtcct
cttattcgatccacttcatgttacatgtcttctttgcccagtgaagctgttgatgagaag
gaaagatctcgtgtcacttggccaaaacagcttaacgcacctttagaggaggttgatcct
gagattgctgacattattgagcatgagaaagctagacaatggaagggacttgaacttatt
ccatctgagaacttcacatctgtgtcggtgatgcaagctgttgggtctgtcatgactaac
aaatacagtgaaggctatcctggtgccagatactatggaggaaatgagtatatagacatg
gcagaaaccttatgccagaagcgcgctcttgaagctttccggttagatcctgaaaagtgg
ggagtgaatgttcaacctttgtctggatctcctgccaacttccatgtgtacactgcattg
ttaaagcctcatgaaagaatcatggcacttgatcttcctcatggtggtcatctttctcat
ggttatcagactgacaccaagaagatatcagctgtgtctatcttctttgaaacaatgccc
tatagattggacgagagcactggctacatcgactacgatcagatggagaaaagtgctact
cttttcaggccaaaattgattgttgctggtgcaagtgcttatgctagattgtatgactat
gcccgcatcagaaaggtctgtaacaagcaaaaagctgtaatgctagcagatatggcacac
atcagtggtttggttgctgctaatgtaatcccttcaccgttcgactatgctgatgttgta
accaccacaactcacaagtcacttcgtggaccccgtggagccatgattttcttcagaaag
ggtgttaaggaaattaacaagcaagggaaagaggttttgtatgattttgaagacaagatc
aaccaagctgtcttccctggtcttcaaggtggtccacacaaccacactatcacaggacta
gctgttgctttgaaacaggcaactacttcagagtacaaagcataccaagaacaagtcctg
agtaacagtgcaaagtttgctcagactctaatggagagaggatatgaacttgtttctggt
ggaactgacaaccatctggttctagtgaatctaaagcccaagggaattgatggatctaga
gttgagaaagtgttggaagctgttcacattgcatccaacaaaaacactgttcctggagat
gtttctgccatggttcctggtggaatcagaatgggtactcctgctctcacttccagaggc
tttgttgaggaagactttgccaaagtagctgaatacttcgacaaagctgtgacaatagct
ctcaaagtcaaatctgaagctcaaggaaccaagttgaaggatttcgtgtcagcaatggaa
tcctcttcaaccatccaatccgagattgcgaaactgcgccatgaagtcgaggaattcgct
aagcagttcccaacaattgggtttgagaaagaaaccatgaagtacaagaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (14)   
   KEGG PATHWAY (9)   
   KEGG MODULE (5)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (4)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (63)   

Download RDF
DBGET integrated database retrieval system