KEGG   Amborella trichopoda: 18437658
Entry
18437658          CDS       T02990                                 
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
atr  Amborella trichopoda
Pathway
atr03013  Nucleocytoplasmic transport
atr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18437658
  09122 Translation
   03013 Nucleocytoplasmic transport
    18437658
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18437658
   03041 Spliceosome [BR:atr03041]
    18437658
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     18437658
Spliceosome [BR:atr03041]
 Complex C
  Other components
   EJC/TREX
    18437658
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    18437658
SSDB
Motif
Pfam: efThoc1 Mitoc_mL59
Other DBs
NCBI-GeneID: 18437658
NCBI-ProteinID: XP_006847924
UniProt: W1PQL0
Position
Unknown
AA seq 667 aa
MAEATPQLRILLHQQQPQKERSPITVSSHADRNRVLEVFRRALSQVGPPANFALQTVQEA
IKPQKQTVLVQDENQSLENALRALLQELASSAVQLGERTMQYGQSIDGAGSMPGLIPRLL
DIVLYLCEQSHVEGGMIFQLLEDLTEMSTIRDCKEVFGYIESKQDILGKQELFGRGKLVM
LRTCNQLLRRLSKANDVVFCGRILMFLAHVFPLSERSALNVKGVFNTSNQTKYEQEPPEG
ISVDFNFYKTFWSLQEHFCNPTSMTLASAKWQNFTSSLMVVMDTFEAQPLHEDDGSANIL
DEEEAVAFSIKYLTSSKLMGLELKDPNFRRHILVQCLILFDYLKAPGKNDKEGPKEIMRE
EIKSYEERVKKLLEMIPSKGKEFLERVEHILEREKNWVWWKRDGCPPFEKQATERKTNQD
GAKKRKPRWRLGNKELSQLWKWADQNPNALTDAQRVRTPSITEYWKALAEDMDTSAGIEA
EYHHKNNRVYCWKGLRFSARQDLEGFSRFTDHGVEGVVPPELLPPDIRSKYHAKAGDKSK
RAKKEEEVKGNAPLVEDNQNAGATTELEGSGSGAELEDSAAPMDTDVGAVGATNSGGPSP
DEAQKQSPDDEVGQEVVQPILDSEPEPELDAEGKPEQMLEPELPKPATIDLQDGVEESPQ
EPIAPSN
NT seq 2004 nt   +upstreamnt  +downstreamnt
atggcggaagctactcctcaactacgcattctccttcatcagcagcaaccccaaaaggaa
cgctcccccatcaccgtttccagccacgctgatagaaaccgagttcttgaagtatttaga
cgtgcactatcgcaagttggtccacctgcaaattttgctttgcagacagttcaggaagcc
ataaaaccacagaaacaaactgtgttggtgcaagatgagaaccaatccttggaaaatgct
ctacgggcattacttcaggaactagcatcctctgcagttcagttaggagagcgcactatg
caatatggacagtccattgatggtgcagggagtatgcctggtctcatacctcggcttctt
gatattgtcctctatctttgtgagcaaagtcatgtggagggtggtatgatattccagctg
ctagaagatttgactgaaatgtcaaccatcagagattgtaaagaagtttttggctatatc
gagagcaagcaggatatcttaggcaagcaagaactctttggcagagggaagcttgtaatg
ttgaggacatgcaatcagcttcttcgtcgactttctaaggcaaatgatgtggtcttctgt
ggccgtatccttatgtttctggctcatgtcttcccattgtcggagcgctcagctttgaat
gtaaagggagttttcaatacatccaatcaaacaaagtatgaacaagagcctcctgaagga
atttctgttgatttcaacttctacaagacattttggagtttgcaggagcacttctgtaac
cctacttccatgactctagcttctgccaagtggcagaacttcacatccagtttgatggtt
gtgatggatacatttgaagctcagcctttacatgaagatgatggaagtgcaaatattctt
gacgaagaagaggcagtagcattcagcattaagtatctgaccagcagtaaattaatggga
ctagagttaaaagatccaaatttccgccgccatatccttgttcaatgccttatattgttt
gattaccttaaggcacctggaaagaatgacaaagaaggaccaaaggaaatcatgagagaa
gaaattaaatcctatgaagagcgtgtgaagaagcttcttgaaatgataccttcaaaaggg
aaagagtttcttgaaagggtcgagcatatattagaacgggagaaaaactgggtttggtgg
aaacgtgatggatgcccgccttttgaaaaacaagcaacagagaggaagacaaaccaagat
ggcgctaaaaaacgcaagccacgttggagacttggaaacaaggaactttctcagctgtgg
aaatgggcagatcagaatccaaatgctttgacggatgctcaacgtgtaagaacaccctcg
atcacggagtactggaaagctcttgcagaggatatggatacttctgcaggaatagaggct
gaatatcaccacaagaataatcgtgtttactgctggaagggcctacgattttcagctcgt
caagacttggaagggttctctcggttcacggaccatggtgttgaaggagttgtgccacca
gaacttctgccacctgatatacgatcaaagtatcatgctaaagctggtgacaagtctaaa
cgagctaagaaggaggaggaagtaaagggcaatgccccactagttgaggacaaccagaat
gctggtgccacaactgagctagagggaagtggcagtggtgctgagctggaagactctgca
gccccaatggacaccgatgtgggcgcagtgggtgcaacaaatagtggcggtccatcaccc
gatgaggctcaaaagcagagcccagatgatgaagtgggtcaagaggtggttcaaccgata
cttgattctgagcctgagcctgagctcgatgctgaaggcaagcccgaacaaatgcttgag
cctgaattacccaaacccgccactatagatttgcaggatggagttgaggagagtcctcaa
gagccgattgctccctctaattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (32)   

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