KEGG   Amborella trichopoda: 18440605
Entry
18440605          CDS       T02990                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
atr  Amborella trichopoda
Pathway
atr03018  RNA degradation
atr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18440605
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18440605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18440605
   03041 Spliceosome [BR:atr03041]
    18440605
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18440605
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     18440605
Spliceosome [BR:atr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    18440605
 Complex C
  U2 snRNP components
    18440605
SSDB
Motif
Pfam: LSM SM-ATX LSM14 Hfq DUF150_C
Other DBs
NCBI-GeneID: 18440605
NCBI-ProteinID: XP_006850806
UniProt: W1PQS6
Position
Unknown
AA seq 93 aa
MLFFSYFKELVGKEVTVELKNDIAIKGILHSVDQYLNIKLENSRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPPDGVDTELLHDATRREARAG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctgtttttttcctatttcaaggaactcgttgggaaggaggttacagttgagctgaag
aatgatattgctataaaggggattttgcattcagtggatcaataccttaatattaagcta
gaaaactctagggttgttgaccaggacaagtacccacacatgctctcagttcggaactgt
tttatccgaggttcagtggttagatatgttttgcttccaccagacggggtcgacactgaa
cttttgcacgatgccacgaggcgagaagctcgtgctggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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