KEGG   Agrobacterium fabrum: Atu1339
Entry
Atu1339           CDS       T00070                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
atu  Agrobacterium fabrum
Pathway
atu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Atu1339 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atu03019]
    Atu1339 (rne)
   03009 Ribosome biogenesis [BR:atu03009]
    Atu1339 (rne)
Enzymes [BR:atu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Atu1339 (rne)
Messenger RNA biogenesis [BR:atu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Atu1339 (rne)
Ribosome biogenesis [BR:atu03009]
 Prokaryotic type
  rRNA processing factors
   Atu1339 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 zf-CCHC
Other DBs
NCBI-ProteinID: AAK87130
UniProt: Q7CZH1
Position
circular:complement(1323801..1326734)
AA seq 977 aa
MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDFESADAPESGAPMIDLSQ
VDQPDVGIVAASETTDVAVTEEVAPVSEAVSEETAVEVVAEEAPAEEEKPKKRVRRPRAK
KKTAEEIAAEAAEASSEDDGSTGGDMAAMVDTDTISEEVEGLRRGNDDDDDDDDDDHHEK
EVIESVGAEDAMEEVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEI
KRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREA
KDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVA
IDVNSGRSTREHSIEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEK
KLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIAL
HVLRGVEEYLLRNTTHNITVRCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQ
HFAIDRGEAVENPVKIESLIQMLPSFVEEEDDIVIEVEEDEEEEEIVKAESAQPRQQPQG
DNGEDGKRKRKRRRRRRGKGGQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDE
NGANEAANADEDGKRKRRRRGKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTE
EPATAAEVVEGVVADVVAEEAPKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIEPVV
VEATVVDVAIEEVGEASAGLAPGADVPGTEEKTRANRGSNVSSSEPVVTSSGSPASNPDG
DEPKPRKGGWWQRKGFF
NT seq 2934 nt   +upstreamnt  +downstreamnt
atggcagacaaaatgcttatcgacgcctcccacgaagaggagacacgcgtagtcgttgtc
cgtgggaaccggatcgaagaattcgattttgaatcggagcacaagaaacagatccgcggc
aatatctaccttgccaaggtgacgcgcgttgagccttcccttcaggcggccttcgtcgat
tacggtggaaatcgccacggctttctcgcctttgcggaaattcatccggattattaccag
attccgctcgcggaccgtcaggccctcttgaaggcggaagccgaggatcaccgccgcagc
gacgatttcgaatcggccgatgcgcccgagtccggcgcgccgatgatcgacctgtcgcag
gtggatcagccggatgtcggcatcgttgccgcaagcgaaaccaccgacgtcgccgtcacg
gaagaagtcgcacccgtttcggaagcagtttctgaagaaacggccgttgaggtcgtcgcc
gaagaagcgccggctgaggaagaaaagccgaagaagcgcgttcgccgcccccgcgccaag
aagaagacagctgaagaaatcgcagccgaggcggcagaagcgtcttctgaagacgacggc
agcaccggcggcgacatggccgcaatggtcgataccgacacgatttccgaggaagtcgaa
ggccttcgtcgcggcaatgacgatgatgacgacgacgatgatgacgatcatcacgaaaag
gaagtgattgagtccgtcggtgccgaagacgccatggaagaagttccggatcgcgtcgcg
cgcaagccgcgcaagcagtaccgtatccaggaagtcatcaagcgccgccagatccttctg
gtccaggttgccaaggaagaacgcggcaacaagggtgctgcactcaccacctatctgtcg
cttgcaggccgttattccgtgctgatgccgaatactgcgcgtggcggcggcatttcccgc
aagatcacccagccgaccgaccgcaagcgcctgaaggaaatcgcgcgcgatctggaggtt
ccgcagggcatgggcgtcattctgcgcaccgcaggcgccaatcgtacccgcgtcgagatc
aagcgcgactttgaatatctgatgcgcctgtgggaaaacgtccgcacgctgacgctgaat
tccacggccccctgccttgtttacgaggaaggctcgctgatcaagcgctcgatccgcgat
ctttataacaaggatatcagcgagatcatcgtttcaggcgaagaaggctatcgtgaagcg
aaagacttcatgaagatgctgatgccgagccacgccaaggtggttcagccctaccgcgac
attcatccgattttctcgcgctcgggcatcgaagcccagctcgaccggatgctgcagccg
caggtgacgctgaaatccggcggttatctcatcatcaaccagacggaagctctggttgcc
atcgacgtgaactccggtcggtcgacccgcgagcattccatcgaagaaaccgcgctcacg
accaaccttgaggcggcggaagaagtggctcgccagctgcgtcttcgcgaccttgctggt
ctcgttgtcatcgacttcatcgacatggaagaaaagcgcaacaaccgctccgtcgagaag
aagctcaaggattgcctgaaaaacgaccgggcgcgcattcaggtcggccgcatctcgcat
ttcggccttctggaaatgtcgcgtcagcgcatccgcgcttcggtgctggaatcgaccacg
caggtttgccagcattgcggcggcacgggccatgtgcgttcggaatcctccatcgcgctg
catgtgctgcgcggcgtcgaggaatatctgctgcgcaacaccacccacaacatcaccgtg
cgctgcacgccggaaacggcgctctacctgctcaaccacaagcgcggctcgatcgtcgat
tacgaaggccgcttcggcgtcgccatcatcatcgccgccgattccagtgtcggggcgcag
catttcgccatcgatcgcggcgaagccgtcgaaaatccggtgaagatcgaaagcctcatc
cagatgcttccgagcttcgttgaagaagaagacgatatcgtcatcgaggtggaagaggac
gaagaagaggaagaaatcgtcaaggccgaaagcgcccagccacgccagcagccgcagggt
gacaatggcgaggacggcaagcgcaagcgcaagcgtcgccgccgccgtcggggcaagggt
ggtcagaacgagcagaacggtgcgctcgatggccagtccggcaatgacgcggaagacgac
gatgccgaaggcgacgacgatggcgtcgaaaccgatgaggccggtgcagattccgacgaa
aacggtgcgaatgaagctgcaaatgccgacgaagacggcaagcgcaagcgccgtcgtcgc
ggcaagcgtggcggtcgccgtaaccgtgacgatgctctagatgctgcaggcgccgacggc
gagacggaaggtgaaggcgcggaaggtgaagaggtttccactgcagcgccggtaacggaa
gagcccgccaccgccgccgaagtggtggagggtgtggttgccgacgtcgtggcagaagaa
gccccgaagaagccccgccgcacccgcaaggcgaaaaccaagaccgaaaccgaaaccgaa
gaggcgccaaaggccgaaaccgtcgaaacggtcgagccggtaatcattgagccggtcgtc
gttgaagcgactgtcgtcgatgtcgccatcgaagaggtcggtgaagcctcagccggtctg
gcaccgggagcggacgttcctgggaccgaagaaaagacccgcgcgaaccggggcagcaat
gtttccagttcggaaccggtcgtcacctcttccggttcgcctgcgagcaaccctgatggc
gatgagccgaagccacgcaagggtggctggtggcagcgcaaaggcttcttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (37)   

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