KEGG   Agrobacterium fabrum: Atu2443
Entry
Atu2443           CDS       T00070                                 
Symbol
rluD
Name
(GenBank) ribosomal large subunit pseudouridine synthase, RluD subfamily
  KO
K06180  23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Organism
atu  Agrobacterium fabrum
Brite
KEGG Orthology (KO) [BR:atu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:atu03009]
    Atu2443 (rluD)
Enzymes [BR:atu01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.23  23S rRNA pseudouridine1911/1915/1917 synthase
     Atu2443 (rluD)
Ribosome biogenesis [BR:atu03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Atu2443 (rluD)
SSDB
Motif
Pfam: PseudoU_synth_2 S4 S4_2 ThiS
Other DBs
NCBI-ProteinID: AAK88180
UniProt: Q7CX17
Position
circular:2412873..2413895
AA seq 340 aa
MNDPFKQGGDARKVLIAGEDAEGRIDVWLVGEVGSDLSRSRLKALIEQGAVLLNGQPVTE
PKKKVHPGDRVEIVMPEPEDPVPQGEDIPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGT
LVNALIYHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFADHGRTGP
LERAYKAVVWGRPRTLRGTVDAALGRGTDRTKRAVKNEDSFDAREAITHYEVMERFHEKP
DASCLASMVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFRTKANLLDEPARSTVNRF
PRQALHAYLLAFEHPRTGEVMEFETDMPEDMEELVTALRS
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgaacgacccctttaaacaaggcggagacgcaaggaaagtcctgattgccggggaagac
gccgaaggccgcatcgatgtgtggctggtgggcgaagtcggcagcgatctgtcgcgcagc
cgcctgaaggcgctgatcgagcagggcgcggtcctcctgaacggccagccggtgaccgaa
ccgaaaaagaaggtgcatccgggcgatcgcgtcgagatcgtcatgccggagccggaagac
cccgtgccgcagggcgaggacatcccgctcgacgtggaatatgaggatgaagacctgatc
gtgctcgtcaaacccgccggtctcgtcgtgcatccgggcgccggcaactggacgggaacg
ctggtcaacgcgctcatctaccattgcggcgacagcctgtccggcattggcggcgtcaag
cggccgggcatcgtgcaccggctggacaaggaaacctcgggcgtcatggtggtggcgaag
aacgacaatgcccaccgtcacctcgctgcgcaatttgccgaccatggccgcaccggcccg
ctggaacgcgcgtacaaggccgtcgtctggggccgcccgcgcacgcttcgcggcaccgtt
gacgcagcgctcgggcgcggcactgaccgcaccaaacgcgctgtcaagaatgaggattcg
ttcgatgcccgcgaggcgatcacccattatgaggtgatggagcgctttcacgaaaagcct
gacgcctcctgcctcgcttccatggtggaatgccgtctggagacgggccgcacgcaccag
attcgcgttcacatggcccatatcggccatccgctgatcggcgatcccgaatatggcgcg
gccttccgtaccaaggcgaacctgctggacgaaccggcaagaagcaccgtcaaccgcttt
ccgaggcaagcgctgcatgcctatcttctggccttcgaacacccccgcaccggtgaggtg
atggaattcgagacagatatgcctgaagacatggaagagctggtgactgccctgcgcagc
tga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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