KEGG   Aliivibrio wodanis: AWOD_I_0012
Entry
AWOD_I_0012       CDS       T03808                                 
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
awd  Aliivibrio wodanis
Brite
KEGG Orthology (KO) [BR:awd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:awd03032]
    AWOD_I_0012 (gyrB)
   03400 DNA repair and recombination proteins [BR:awd03400]
    AWOD_I_0012 (gyrB)
Enzymes [BR:awd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     AWOD_I_0012 (gyrB)
DNA replication proteins [BR:awd03032]
 Prokaryotic type
  DNA Topoisomerases
   AWOD_I_0012 (gyrB)
DNA repair and recombination proteins [BR:awd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      AWOD_I_0012 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: CED70110
UniProt: A0A090IP78
Position
1:11089..13506
AA seq 805 aa
MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDII
VTIHEDNSVSVTDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKVELTINRKGEIFQQTYCHGEPQAPLAVVGTTDTTGTKIRFWPSEQTFTNVE
FVYDILAKRLRELSFLNSGVSIILQDMREEDKSDHFMFEGGIQAFVTHLNRNKTPVHQKI
FYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNTFMD
KEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA
EFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQS
ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI
GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK
KGKQEQYIKDEEAMGEYQITQALDNAALFVNPNESIFGQELENLIRTFNGVVKLLERMSR
RYPLPLLNRLVYTPRLTQDECENEATVRAWTEALVADLNEHETGASQYNPDLDFNEELNI
HQPKLVVRTHGVQHEYVLSADLLNSKEYGRIADLSEALSGLIEEGAYAQRGERKQPVETL
DEAIAWLIKDSRRGVYLQRYKGLGEMNPEQLWETTMDPDSRRMMQVTINDAVSADELFTT
LMGDHVEPRRNFIEENALRVANLDV
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgtcagaaaattatgattcatcgagtattaaagtactaaaaggtctggatgcggtacgt
aaacgtccgggtatgtatatcggcgacaccgacgacggtactggtcttcaccacatggtg
tttgaggttgtcgataactcaatcgatgaagctcttgctggtcactgtaatgatattatt
gtaacgattcacgaagataactctgtttctgttactgatgatggccgtggtattccaact
gaaattcacgaagaagaaggcgtatcagcagcagaagttatcatgacggtacttcacgcg
ggtggtaagttcgatgataactcttataaagtatctggcggtcttcacggcgtaggtgtt
tcggttgtaaacgcattgtctgaaaaagttgaactaacgattaatcgtaaaggtgaaatc
tttcaacaaacgtattgtcacggtgaacctcaagcgccattagcggttgtgggcacaaca
gacacaacaggtactaaaattcgtttttggcctagtgagcaaacatttacaaacgttgag
tttgtgtatgacatcttagctaaacgtctacgtgaactttcattcttgaactctggtgtg
tctattattctacaagacatgcgtgaagaagataaatctgatcacttcatgttcgaaggt
ggtattcaagcgttcgttactcatttaaaccgtaataaaacgcctgttcaccaaaaaata
ttctactttgatgctgagcgcaaagaagacggtattgttgttgaagttgctatgcagtgg
aatgattcttaccaagagaacatcttctgttacaccaataatatccctcaacgcgatggt
ggtgctcacttatctggcttccgttcagcgttaacgcgtacattaaataccttcatggac
aaagaaggcttttctaagaaagcgaaatcatctgcatcaggtgatgatgcgcgtgaaggt
ctaacggcggttgtttctgttaaagttcctgatcctaaattctcaagccaaactaaagat
aaactggtttcttcagaagtgaagtctgcggttgaatcggcaatgaatgaaaaattagct
gaattcttagcggaaaacccaggcgaagcaaaaatggtttgttctaaaatcattgatgca
gctcgtgcacgtgaagcggctcgtaaagctcgtgaaatgactcgtcgtaaaggcgcgtta
gatattgcaggtcttcctggtaagcttgctgattgtcaggaaaaagatcctgcacaatct
gaactatatatagtggaaggggactctgctggcggttcagccaagcagggacgtaaccgt
aaaaaccaagcgatccttccgctgaaaggtaaaattctaaacgtagaaaaagcacgtttt
gataaaatgatctcttctcaagaggttggaacattaattactgcattaggttgtggtatt
ggtcgtgacgaatacaatccggataaactacgttaccacaacatcatcatcatgaccgat
gccgatgtcgatggttctcacatccgtactctacttttgactttcttctatcgtcaaatg
cctgagctgattgaacgtggctacatctacattgctcaaccaccactttacaaagtgaaa
aaaggtaaacaagagcaatatattaaagatgaagaagcgatgggtgaataccaaatcacg
caagcgttagacaatgcggcgttatttgttaacccaaatgagtcaatcttcggccaagag
cttgaaaatttaattcgtacctttaatggtgtagttaagttacttgagcgtatgagtcgt
cgttacccattaccgctattaaatcgtttagtttacacgcctcgtttaactcaagacgag
tgtgaaaacgaagcgacagttcgagcgtggactgaggcattagttgctgatcttaatgag
catgaaacaggtgcaagccaatataatccggatctagattttaatgaagaattaaatatt
catcagcctaagcttgttgtgcgtactcacggtgttcagcatgaatacgtattaagtgca
gatctactgaactcgaaagagtacggtcgtattgctgatttatcagaagcgcttagtggt
ctgattgaagaaggtgcttatgcacaacgtggcgagcgtaagcaaccagtagaaacactg
gatgaagcgattgcatggttaattaaagactctcgtcgtggtgtttacttacagcgttac
aaaggtctaggtgaaatgaacccagagcagctttgggaaacaacgatggatcctgattct
cgccgtatgatgcaagtaactatcaacgatgcagtaagtgctgatgagttgtttactacg
ttaatgggtgatcatgttgagccgcgtcgtaacttcattgaagagaacgcactacgtgta
gctaacttagacgtataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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