KEGG   Achromobacter xylosoxidans NCTC10807: ERS451415_01848
Entry
ERS451415_01848   CDS       T04522                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
axx  Achromobacter xylosoxidans NCTC10807
Pathway
axx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:axx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ERS451415_01848 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:axx03019]
    ERS451415_01848 (rnr)
   03016 Transfer RNA biogenesis [BR:axx03016]
    ERS451415_01848 (rnr)
Enzymes [BR:axx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ERS451415_01848 (rnr)
Messenger RNA biogenesis [BR:axx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ERS451415_01848 (rnr)
Transfer RNA biogenesis [BR:axx03016]
 Prokaryotic type
  tRNA degradation factors
   ERS451415_01848 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 HTH_20 HTH_IclR Rrp44_S1 MarR_2
Other DBs
NCBI-ProteinID: CKH14008
Position
1:2018451..2020916
AA seq 821 aa
MAKRSNNESNNRSTPLPEAPPDFDPDVPSREAILKALRSAGAPLSPVELAERMGVERPAT
MVGFERRLGAMERDGQLMPNRKGVLLLATKLDFVAGKVLGHRDGFGFLLRDDGGPDLFLS
PREMLKVLHGDRVLVKPSGEYRGKPEGTIVEVIERRTNKLVGRFLHEHGLSIVVPEDQRI
KHDILIPPSDTNGAQHGQVVAVEIMEQPTRHTQPLGRVSEVLGEIDDPGMEIEIAVRKFD
VPVEFSEAARKQAARLPDVVRKSDLKDRVDLRDVPLITIDGEDARDFDDAVYCEAVELGT
GQRKRPGWRLLVAIADVSHYVRPGDALDDDALERGTSVYFPRRVIPMLPESLSNGLCSLN
PDVDRLVLVCDMVIPASGAKAGTVTAYQFYNAVMHSHARTTYTNIWAALQQPGGPAAHAM
RAVMPQVQSLYELFHLLSQSRKKRGAIDFDTVETKIVCNELGRIEQIVPSVRNDAHKLIE
ECMLAANTCAADFMTRSKHPGLYRIHEGPTPERLQSLREFLRTMGLSLGGGDTPTAKDYG
DFLDSVRGRPDYQLLQTMCLRSMQQAIYSPDNLGHFGLSYPGYSHFTSPIRRYPDLLTHR
VIKALLAGQRYVPSLDDQPVVIGRTQREHEHAIWEKMGLVLSASERRADEASRDVEAWLK
CWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRGER
TGMRYRLTDKVQVQVSRVDLEARRIEFRLVQGTSFDALRKASARGPDEGPRRVKKAAAPK
PAALKGQTAKERRAEAKKAGKPSKVAQQRAAPAKKATRKRH
NT seq 2466 nt   +upstreamnt  +downstreamnt
ttggcaaaacgatcgaataacgaatcgaacaacagatccactccgttgccggaagcgccg
ccagacttcgatcccgatgtcccgtcccgtgaagccattctgaaggcgctgcgatccgcg
ggggcgccgctgtctccggtggagttggccgagcgcatgggcgtggagcgtccggcgacg
atggtgggattcgaacgccgcctgggcgcgatggagcgcgatggccaattgatgcccaat
cgcaagggcgtgctgctgctggccaccaagctggacttcgtggcgggcaaggtgctgggc
caccgcgacggtttcggcttcctgctgcgcgatgatggcgggccggacctgttcctgtcg
ccgcgcgaaatgctcaaggtgctgcatggcgaccgcgtgctggtcaagccgtcgggcgaa
taccgcggcaagccggaaggcaccatcgtcgaagtcatcgagcgccgcaccaacaagctg
gtgggccgtttcctgcacgagcacggcctgtccatcgtggtgccggaagaccagcgcatc
aagcacgacatcctgatcccgcccagcgacaccaacggcgcccagcatgggcaggtggtg
gcggtcgagatcatggagcagcccacccgccacacgcagccgctgggccgtgtgtccgaa
gtgttgggcgagatcgacgatcccggcatggaaatcgagatcgcggtgcgcaagttcgac
gtgcccgtcgaattctccgaggccgcgcgcaagcaggccgcccgcctgccggacgtggtc
cgcaagagtgacctgaaagaccgcgtcgacctgcgcgacgtgccgctcatcaccatcgac
ggcgaagacgcgcgcgatttcgacgatgccgtctactgcgaggcggtggaactgggcacc
ggccagcgcaagcggccgggctggcgcctgctggtggcgattgccgacgtcagccactac
gtgcggcccggcgacgcgctggacgacgacgcgctcgagcgcggcaccagcgtgtatttc
ccgcgccgggtcattccgatgctgcccgagtcgctgtccaatggcctgtgctcgctgaat
ccggacgtcgaccgcctggtgctggtgtgcgacatggtgattccggcctcgggcgccaag
gccggcacggtcaccgcctaccagttctacaacgcggtgatgcactcgcatgcccgcacc
acctacaccaatatctgggcggcgctgcagcagcccggcggcccggcggcccatgccatg
cgcgccgtcatgccgcaggtgcagagcctgtatgaactgttccacctgctgtctcagagc
cgcaagaagcgcggcgcgatcgatttcgacacggtcgagaccaagatcgtctgcaacgag
ctggggcgcatcgagcagatcgtgccgtcggtgcgcaacgatgcccacaagctgatcgag
gaatgcatgctggccgccaacacctgcgcggccgacttcatgacgcgcagcaagcatccc
ggcctgtaccgcatccatgaaggcccgacgcccgagcgcctgcaatcgctgcgcgagttc
ctgcgcaccatgggcctgtcgctgggcgggggcgatacgcccacggccaaggactacggc
gatttcctcgattccgtgcgcggtcgtcccgactaccagctgctccagaccatgtgcctg
cgctcgatgcagcaggccatctacagtccggacaacctgggtcacttcggtctgtcgtat
cccggctacagccacttcacctcgcccatccggcgctatccggacctgctgacgcaccgc
gtcatcaaggccctgctggcggggcagcgctacgtgcccagcctggacgaccagccggtc
gtcatcggccgcacccagcgcgagcatgagcacgccatctgggaaaagatgggcctggtg
ctgtcggccagcgagcgccgcgccgacgaggcctcgcgcgacgtcgaggcctggctcaag
tgctggttcgtcaaggagcgcgtgggcgaggacttcagcggcaccgtcaccggcgtggcc
agcttcggcatcttcgtcacgctggatacgctgcacgtcgaagggctggtgcacgtgtcc
gagctgggcggcgagtacttccagttcaacgatgcgctgcacgagctgcgcggcgaacgc
accggtatgcgctaccgcctgaccgacaaggtccaggtgcaggtctcgcgcgtggacctg
gaggcgcgccgcatcgagttccgcctggtgcagggcaccagcttcgatgccttgcgcaag
gcgtccgcgcgtggtcccgacgagggtccgcgccgcgtgaagaaggcggcggcgcccaag
ccggccgcgctcaagggccagaccgccaaggagcggcgcgccgaggccaagaaggccggc
aagccgtccaaggtcgcccagcagcgcgccgcgcctgccaagaaggccacgcgcaaacgc
cactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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