KEGG   Azospirillum sp. B510: AZL_020910
Entry
AZL_020910        CDS       T01169                                 
Symbol
ligB
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
azl  Azospirillum sp. B510
Pathway
azl03030  DNA replication
azl03410  Base excision repair
azl03420  Nucleotide excision repair
azl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:azl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AZL_020910 (ligB)
   03410 Base excision repair
    AZL_020910 (ligB)
   03420 Nucleotide excision repair
    AZL_020910 (ligB)
   03430 Mismatch repair
    AZL_020910 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:azl03032]
    AZL_020910 (ligB)
   03400 DNA repair and recombination proteins [BR:azl03400]
    AZL_020910 (ligB)
Enzymes [BR:azl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AZL_020910 (ligB)
DNA replication proteins [BR:azl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AZL_020910 (ligB)
DNA repair and recombination proteins [BR:azl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AZL_020910 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AZL_020910 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     AZL_020910 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AZL_020910 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT RNA_ligase MafB19-deam
Other DBs
NCBI-ProteinID: BAI72729
RhizoBase: AZL020910
UniProt: D3NWF0
Position
complement(2397669..2400035)
AA seq 788 aa
MQDLFDTPPDPRSIAVDALTPEQAAADLAALAAEIAHHDRLYHQQDQPEITDADYDALVR
RNLAIEARFPELRRADSPSLRVGAAPAAGFGKVRHAIPMLSLGNAFAPEDVAEFDARVRR
FLGLADDAPLTFVAEPKIDGLSCSLRYQKGELVLAATRGDGAEGENVTANVRTIRDVPHR
LPAPFPEVLEVRGEVYMSRDDFLAMNAARAEKGEQLFANPRNAAAGSLRQLDSAITASRP
LCFFGYALGEASEPIAETQWGIRERLKGWGFQLNRPAELCDGKDKLLAYYEGIGRLRAGL
PFDIDGVVYKVDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPV
AELDDITVGGVVVSRATLHNEDEIARKDIRVGDLVVVQRAGDVIPQVVEVVLSQRPADSV
PYVPVETCPVCGSLAIREAGEVVRRCTGGLICAAQAKERLRHFVSRDAFDIEGLGEKIIE
EFWDEGFIKSPVDIFTLEDRVELIGRPGWKEKSVENLFKAINQRRDGIELHRVIFALGIR
HVGEVTAKSLARHYRTMRGWVDGMRAAERAMPGQEWRDLHALNGVGPVTADTILAWFADP
ESAAKLDFYAGSEALRLETIIGSLGIKRLNTRAAQALATRYGNLSDWRAAMERAVAQAPG
QPWLDLVATPDVGEVAAEELAGFFAEERNRLIVEALAGRLIVLEAAVPKAGNSPIAGKTV
VFTGTLERMTRSEAKARAESLGAKVAGSVSGKTDYLVAGADAGSKAAKAKDLGVEILTEE
EWLAKIGG
NT seq 2367 nt   +upstreamnt  +downstreamnt
atgcaggacctgttcgacacgccgcccgatccccgcagcatcgccgtcgatgccctgacg
ccggagcaggccgccgccgatcttgcggcgctggccgccgagatcgcccatcatgaccgg
ctctatcaccagcaggaccagccggagatcaccgacgccgactatgacgcgctggtccgc
cgcaaccttgccatcgaggcgcgcttccccgagctgcgccgcgccgattcgcccagcctg
cgggtcggcgccgcgccggccgccggattcggcaaggtgcggcacgccatcccgatgctg
tcgttgggcaatgccttcgcaccggaggacgtggcggagttcgacgcccgcgtccgccgc
ttcctcggcctcgccgacgatgccccgctgaccttcgtggcggaaccgaagatcgacggg
ctgtcctgctcgcttcgttaccagaagggcgaactggtgctggccgccacccgcggcgac
ggggcggagggcgagaatgtcaccgccaatgtccgtaccatccgcgacgtgccgcaccgc
ctgccggcgcccttccccgaggtgctggaggtccgcggcgaagtctatatgagccgcgac
gactttctggcgatgaacgccgcccgcgcggagaagggcgagcaactgttcgccaacccg
cgcaacgcggcggccggcagtctgcgccagctcgattcggccatcacggcgtcccggccg
ctctgcttcttcggttatgcgctgggcgaggcgtcggagccgatcgccgagacccaatgg
ggcatccgcgagcggctgaagggctggggcttccagctgaaccgtccggcggagctgtgc
gacggcaaggacaagctgctggcctattacgagggcatcggccggctgcgcgccggcctg
cccttcgacatcgacggcgtcgtctacaaggtcgacagcctggagcttcagcagcggctg
ggcttcgtcagccgggcgccgcgctgggccatcgcccacaaattcccggcggagcaggcg
cagacccggctgaaggcgatcaccatccaggtcggccgcaccggcgccctgaccccggtg
gcggaactggacgacatcaccgtcggcggcgtcgtcgtcagccgcgccaccctgcacaat
gaggatgagatcgcccgcaaggacatccgcgtcggcgacctcgtggtcgtccagcgggcc
ggcgacgtcatcccgcaggtggtggaggtggtgctgtcgcagcgcccggccgactcggtg
ccctatgtcccggtggagacctgcccggtctgcggcagcctcgccatccgcgaagccggc
gaggtggtgcgccgctgcaccggcgggttgatctgtgccgcccaggccaaggaacggctg
cgtcatttcgtgtcgcgcgacgccttcgacatcgaggggctgggcgagaagatcatcgag
gagttctgggacgagggtttcatcaagtcgccggtcgacatcttcacccttgaagaccgg
gtcgagctgatcggacggccgggctggaaggagaagtcggtcgagaatctgttcaaggcg
atcaaccagcgccgcgacggcatcgaactgcaccgggtgatcttcgcgctcggcatccgc
catgtcggcgaggtgacggcgaagtcgctggcccgccattacaggacgatgcggggttgg
gtcgatggcatgcgggcggcggagcgggcgatgcccggccaggaatggcgcgatctgcac
gcgttgaacggggtcggcccggtcaccgccgacaccatcctcgcctggttcgccgatccg
gagagtgccgccaagctggatttctatgccggcagcgaggcgctgcggctggagacgatc
atcggctctctcggcatcaagcggctgaacacgcgcgccgcccaggcgctggccacccgc
tatggcaatctctccgactggcgggcggcgatggagcgggcggtggcgcaggcaccgggg
cagccctggctcgacctcgtcgccacgccggacgtcggcgaggtggcggcggaggagttg
gccggcttcttcgccgaggagcgcaaccgcctgatcgtcgaggcgttggccgggcggctg
atcgtgctggaggcggcggtgccgaaggccggcaactcccccatcgccggcaagacggtg
gtcttcaccggcacgctggagcggatgacgcggtcggaggccaaggcgcgggcggaatcg
ctgggcgccaaggtcgccggttcggtttccggcaagaccgattatctcgtcgccggggcc
gatgccggcagcaaggcggcgaaggccaaggatcttggtgtcgagattctgaccgaggag
gaatggctggccaagatcggcggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (64)   

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