KEGG T00684: BamMC406

Burkholderia ambifaria MC40-6: BamMC406_5923

Entry

BamMC406_5923     CDS       T00684

Name

(GenBank) DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

bac Burkholderia ambifaria MC40-6

Brite

KEGG Orthology (KO) [BR:bac00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bac03032]
    BamMC406_5923
   03400 DNA repair and recombination proteins [BR:bac03400]
    BamMC406_5923
Enzymes [BR:bac01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BamMC406_5923
DNA replication proteins [BR:bac03032]
Prokaryotic type
  DNA Topoisomerases
   BamMC406_5923
DNA repair and recombination proteins [BR:bac03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BamMC406_5923

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact DUF4124

Other DBs

NCBI-ProteinID:

ACB68360

UniProt:

B1Z3P7

Position

3:complement(463587..464663)

AA seq 358 aa
MKKPTPRGAAEALAAAVASSTVRLRHVDDRRPGYTRRRLRNGFAYYTKDGERIRDADEIS
RINALAIPPAYTDVWICTDPNGHLQATGRDARGRKQYRYHPLWRETRDANKYARMAAFAR
ALPRIRARVDRDLALPGMPRDKIVATIVRLLDTTLARIGNAEYARENASYGLTTLRKRHV
TIRPGQVRLRFTGKSGIEHDVTVEDPRIGRIVRRCAELPGHELFQYLDDDGVRHSVGSSD
VNDYLRDAAGAEFTAKDYRTWAGSVQALALLRRIPHQGVTHARKQIVETVRTVADTLRNT
PAVCRRCYIHPVVLDTFEAGLLATLEVRRTPRGLRADEAAFAALLEQAARRDRRRTSR

NT seq 1077 nt +upstreamnt +downstreamnt
atgaagaagcccacgccccgcggtgccgccgaagcccttgcagccgccgtcgcgagttcg
accgtgcggctgcgccacgtcgacgaccgccgccccggctacacgcggcggcggctgcgc
aacggtttcgcgtactacacgaaggacggtgaacggatccgcgacgccgacgaaatctcc
cgcatcaacgcgctcgcgattccgcccgcgtacaccgacgtctggatctgcacggacccc
aacggtcatttgcaggcgaccggccgcgatgcgcgcggacgcaagcaataccgctatcac
ccgctgtggcgcgagacgcgcgacgcgaacaagtacgcgcggatggcggccttcgcccgc
gcgctgccgcgcatccgtgcgcgtgtcgaccgcgatctcgcgctaccggggatgccgcgc
gacaagatcgtcgcgacgatcgtgcggctgctcgacacgacgctcgcgcggatcggcaac
gccgaatatgcgcgcgagaacgcgtcgtacgggctgacgacgctgcgcaagcgccacgtg
acgatccggccgggacaggtgcgcctgcgcttcacgggcaagagcggcatcgagcacgac
gtgaccgtcgaggatccgcgcatcggccgcatcgtgcggcgctgcgcggaactgccgggg
cacgagttgttccagtatctggacgacgacggcgtgcgccattccgtcggctcgtccgac
gtgaacgactatctgcgcgacgccgcgggagcggagttcaccgcgaaggattaccggacg
tgggcgggcagcgtgcaggcgcttgcgctgttgaggcgcatcccgcatcagggcgtcacg
catgcgcgcaagcagatcgtcgagacggtgcggaccgtcgccgacacattacgcaacacg
ccggccgtgtgccgacgctgctacatccatccggtggtgctcgatacgttcgaggccggg
ttgctcgcgacgctggaggtgcgccgcacgccgagggggctgcgtgcggatgaggcggcg
ttcgcggcgttgctcgagcaggctgcgcgccgcgatcgacgacgtacgagtcgataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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