KEGG   Burkholderia ambifaria AMMD: Bamb_0513
Entry
Bamb_0513         CDS       T00398                                 
Name
(GenBank) ribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
bam  Burkholderia ambifaria AMMD
Brite
KEGG Orthology (KO) [BR:bam00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:bam03016]
    Bamb_0513
Enzymes [BR:bam01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Bamb_0513
Transfer RNA biogenesis [BR:bam03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Bamb_0513
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: ABI86072
UniProt: Q0BIF1
Position
1:576754..578844
AA seq 696 aa
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADTA
AQQIDLDFLWECAPAEEFTYTALAAEYFGATYGAVERAALVLRLHGSPVYFRRKGRGQYQ
RAPEDQLKMALASLERKRQQALVQVQYEEELKAGKLPEAFAGKVLGLLTRPDKNSIEYKA
LEAAAGARGVSPARLMLDCGGVASARALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAD
VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIVRGDAVDAIARTRLSTVYM
PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVNRETQDIVANETRAELVYVKSNLRHNT
LDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV
EGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM
QTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAV
VQGFDDTYTAYADYQRRMEYFWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLG
VHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGEAAEDEDETEGGDDTLVDAEDA
SAQTEAEALAESDGAAAEGGDAATGNGQASEEGRAS
NT seq 2091 nt   +upstreamnt  +downstreamnt
gtgaacgttttcttcgaggaatcgggcagtttcaaggcgggcagcgtgctgtcgcgccag
ggcgacgcgtttcaggtcgagttgcccggcgggcggcgggcgaaggtgcgcgcaaaagac
gtgctgatcgaattcgagaagccggccgcgagcgaactgatgcaggaagccgacacggcc
gcgcagcagatcgacctggatttcctgtgggaatgcgcgccggcggaagaattcacctac
acggcgctggccgcggaatacttcggcgcgacctacggggcggtcgagcgcgcggcgctg
gtgctgcggctgcacggctcgcccgtctacttccgccgcaaggggcgcggccagtaccag
cgcgcgccggaagatcagctcaagatggcgctcgcgtcgctcgagcgcaagcgccagcag
gcgctcgtccaggtccagtatgaagaggagctgaaggccggcaagctgccggaggcgttc
gcgggcaaggtgctcgggctgctgacgcggccggacaagaattcgatcgaatacaaggcg
ctcgaggcggcggccggcgcgcgcggcgtgtcgccggcgcggctgatgctcgactgcggc
ggcgtcgcgtcggcgcgtgcgctgcacgaggcgcgtttcctcgcagaatttttcccgcac
ggcacgggctttccgcccgtcacggtcggcccgctgccggacgacctgccgcgcgcggac
gtcgaggcgttctcgatcgacgacgtcacgacgaccgaaatcgacgatgcgttctcggtc
gagcacctggccgacggtcgcgtgcggatcggcgtgcacatcgcggcgccggcgctcggc
atcgtgcgcggcgacgcggtcgatgcgatcgcccgtacgcgcctgtcgaccgtctacatg
ccgggcgacaagatcacgatgctgccggacgacgtcgtcgacgtgttcacgctgaaggag
ggcgactaccgcccggcgctgtcgctgtacatcatcgtcaaccgcgagacgcaggacatc
gtcgcgaacgagacgcgcgccgaactcgtgtacgtgaagagcaacctgcgccacaacacg
ctcgacgagctcgtcaacgaggagacgctcgcggccggcaccggcgactacccgcacaag
gacgacatcgccgtgctgtggccgctcgcgcaggcgctgttcgagaagcgccaggtcgcg
cgcgcgggctatggcctgaagcgcgaggtgcagcgcaacaccgactacaacttctacgtc
gaaggcgagcacgtgacgatcacgccgcgtcgccgcgggtcgccgctcgacctgatcgtg
tcggagctcgcgatcctcgcgaactcgacgtggggtgcgttcctgcacgatcacacggtg
ccgggcatctaccgctcgcagcgcggcttcggcgcgccgggcccgaagcgcacgcggatg
cagacgtcggccgcgccgcacgaaggcctcggcgtcgcgcagtacgcgtggagcacgtcg
ccgctgcgccgctacgtcgacctcgtgaaccagtggcagctgctcgcgtgcgtgcagcac
ggcgtcaccgcgaagctcgccgcgccgttcaagccgaaggacgccgacctgtacgcggtc
gtgcagggcttcgacgacacctataccgcgtacgccgactaccagcgccggatggaatac
ttctggtgcctgcgctggctcgcgcaggagcagaagaagcaggtcgtcgcgagcgtcgtg
aagggcgatctcgtgcgtctcgaggaaattccgctgctgctgcacgtgccggggctcggc
gtgcatgcgcgcggcacgcgcgtgctgctcgacgtgatgtcgctcgacgagctgacgatc
gaggcgtcggtgcgactgctgaacgtgctcgacgcgccgaccgtgacgagcggcgaggcg
gccgaggacgaagacgaaaccgaaggcggcgacgacacgctggtcgatgcggaagacgcg
tcggcgcaaaccgaggccgaagcgctggccgaatcggacggcgcggcggccgaaggcggc
gatgccgcgaccggcaacggccaggcaagcgaagagggccgcgcatcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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