KEGG T00821: BUAPTUC7

Buchnera aphidicola Tuc7 (Acyrthosiphon pisum): BUAPTUC7_342

Entry

BUAPTUC7_342      CDS       T00821

Symbol

rne

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

bau Buchnera aphidicola Tuc7 (Acyrthosiphon pisum)

Pathway

bau03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bau00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BUAPTUC7_342 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bau03019]
    BUAPTUC7_342 (rne)
   03009 Ribosome biogenesis [BR:bau03009]
    BUAPTUC7_342 (rne)
Enzymes [BR:bau01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BUAPTUC7_342 (rne)
Messenger RNA biogenesis [BR:bau03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BUAPTUC7_342 (rne)
Ribosome biogenesis [BR:bau03009]
Prokaryotic type
  rRNA processing factors
   BUAPTUC7_342 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1 PNPase_C

Other DBs

NCBI-ProteinID:

ACL30150

Position

complement(380521..383229)

AA seq 902 aa
MKRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDY
GEEKNGFLPLKEISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFI
SLAGSYLVLMPNSPKSGGISRRIEGNDRIALKELLTLLELPEEMSLIIRTAGAGKSIESL
RWDLSLRLQHWKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLA
RKHITFLGRPDFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALT
AIDINSSRSTSGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIE
NRLREIARDDRARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLS
LSILRLIEEEALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMK
TPHYSVSRIRKSESKNYTRYGLSNIRQSKITSFLKKNLLKKKQKEILDVANFNFYDNCHN
KIQEAQENILKKNNYNNILLKVLSNNRNFIFKMITWFKNSFFIKNMLITSDIFKKNTLKN
TNNIFFKKKYSSLNKKNNNQKKRVILSKLFKSNIENIPLKNKKLDTSSANYLYDNIERKK
NITKKNDLIQKNIHENSYLKHVLMNRYNVINIINNNYIFYKIFNRTKIFKNQNTNNSFLK
FSSVTSPIFIFSSVFSLELALGKVWIKYPIAILDEIKKQKKINRKQILHISSISETNTIV
NKNNYSGIKKIKHETYSFKKYVKNNIQNQEVTQSQLIKRTKKRNVFILDKKNFLYKRTCN
RKNKIHQSSAPITKISKQSDLNKKEKEFHYNLSMMKSSLRGKNSAGVHSATNFSNSPVSK
LK

NT seq 2709 nt +upstreamnt +downstreamnt
atgaaaagaatgttaattaatgcaactcagcaggaagagttgcgcgtagctcttgttgat
ggtcagcgtttatatgatcttgatatagagcattctggatcagaacaaaaaaaatcaaat
atatataagggaaagattactcgtatagaacctagtttagaagctgcttttgtagattat
ggtgaagaaaaaaatggttttttgccgttaaaagaaatttctaaaaattattttccagaa
aatcatattgaaactttaggttttaatatcaaaaatgttttacaagaaggtcaagaagtt
attgttcaaattagtaaagaagaacgaggaaccaaaggtgcagctttaacaacttttatc
agtttagctggaagttatttagttctgatgccgaatagtcctaaatctggtggtatatca
agaagaattgaaggaaatgataggatagcattaaaagagttattgacgttattagaacta
cctgaagaaatgagtttaattattcgaactgcaggagccggaaaatctatcgaatcatta
agatgggatctgtctctgagattacaacattggaagactattcaaataatagcaaaaagt
cggactgctccatttttgattcatcaagaaagtaatattattgttcgtgcttttagagat
tatttacgtcaagatattggagaaattttaatcgataatcctaaaatattagatttagcc
cgaaaacatattacttttttaggtcgtccagattttgtaaataaaataaagctatatagc
ggagaagttcctttgttcagttattttcaaattgaaacccaaatcaattctgcttttcaa
agaaaagtcagattaccttctggtggttcgattatggtagatagcactgaagctttaaca
gctattgacatcaattcttctcgttctacaagtggaactgatattgcatctacagcattt
aatactaatctcgaggcggtagatgaaatttcccgtcaattacgactacgagatttaggc
ggtttaatagtaattgatttcatagatatgtccgctattagtcatcagcgagccattgaa
aatagattacgtgaaattgcacgggatgatagagcgcgcattcaaattggtcaaatttct
cgttttggtttgttggaaatgtctagacaaagattgagttcgtctctaggagaatctagt
catcatatttgtccgagatgtacaggaacagggactatcagagataatgaatctttatct
ttgtctattttacgtttaattgaagaagaagcactaaaagaaaatacatatgaagtacgt
gctattgtaccagtagaaatagcgtgttatttactaaatgaaaaaagagatgctgttcat
gcaattgagaaacgtcaggctggtggaaaaactataattgttcctagcaaaaagatgaaa
actcctcattattctgtttctaggatcagaaaaagtgaaagtaaaaattatacaagatat
gggctttctaatattcgtcagagtaaaattacaagtttcttaaaaaaaaatctcttgaaa
aaaaaacagaaagaaattttagatgttgctaattttaatttttatgataattgtcataat
aaaatacaagaagcacaagaaaatattttaaaaaagaataattataataatatattgtta
aaagttttatcaaataacagaaattttatatttaaaatgatcacttggtttaaaaattct
ttttttattaagaatatgttgattacaagcgatatttttaaaaagaatactttaaaaaat
acgaataatattttttttaaaaaaaaatatagttctttaaacaaaaaaaataataatcaa
aaaaaaagagtgattttatctaaactgtttaaatcaaatatagaaaatatacctttaaaa
aacaaaaaattagatacatctagtgcaaattatttgtatgataatatagaaagaaaaaaa
aatataacaaaaaaaaatgatttgatacagaaaaatatacatgaaaattcttacctgaag
catgttttaatgaatagatataatgtaattaatatcattaataataattatatattttat
aaaatatttaacagaactaaaatttttaaaaatcaaaatactaataatagctttttaaaa
ttttcttctgttacatctccaatattcatattttcttcagtattttcattagagttagca
ttaggaaaagtttggattaaatatccaattgctatattagatgaaataaaaaaacaaaaa
aaaataaatagaaaacaaatattgcatatatcttctatttccgaaacaaatacaatagtt
aataaaaataattattctggaataaaaaaaataaaacatgaaacatattcatttaaaaaa
tatgtaaaaaataatattcaaaatcaagaagttacacaatctcaattaataaagagaact
aaaaaaagaaatgtatttattttagataaaaaaaattttctttataaaagaacatgtaat
agaaaaaataaaatacatcaatctagtgcgccaataacaaaaatttctaaacaatcagat
ttaaataaaaaagaaaaagaatttcattataatttatcaatgatgaaatcaagtcttaga
gggaaaaattctgcaggagtacactctgcaacaaatttttctaattcacctgtctcaaaa
cttaaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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