KEGG   Bacillus amyloliquefaciens TA208: BAMTA208_18790
Entry
BAMTA208_18790    CDS       T01824                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
baz  Bacillus amyloliquefaciens TA208
Pathway
baz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:baz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BAMTA208_18790 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:baz03021]
    BAMTA208_18790 (rho)
   03019 Messenger RNA biogenesis [BR:baz03019]
    BAMTA208_18790 (rho)
Transcription machinery [BR:baz03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BAMTA208_18790 (rho)
Messenger RNA biogenesis [BR:baz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BAMTA208_18790 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 NACHT AAA_22 AAA Spore_III_AA AAA_25
Other DBs
NCBI-ProteinID: AEB25908
Position
complement(3565085..3566371)
AA seq 428 aa
MKDVSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEI
IQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEA
VNGDDPESAKERVHFPALTPLYPDRQMVLETKPNYLSTRILDMMAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNQPDAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIK
VAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIR
RSGTRKEELLVPKEHLDRLWAIRKSMSDSPDFAEKFMRKMKKTKTNQEFFDLINQEWKQA
NLSSSARR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgaaagacgtatctatttcctctttggaaaatatgaaattaaaagaactatacgaactg
gcaagacattataaaatctcctactacagcaaactgaccaaaaaagaattaatctttgcg
atactgaaagccaacgccgagcaggaggatcttctgtttatggaaggcgtgctcgaaatc
atccaatcggaaggattcggcttcctcagaccgattaattactcgccaagctcagaagac
atctacatttctgcttcccagatccgccgctttgatttaagaaacggtgacaaagtatcc
ggcaaggtgcgcccgccgaaagaaaacgaacgctattacggacttttgcacgttgaagcg
gtaaatggtgatgatccggaatctgcgaaagagcgagtccattttcctgcgctgactccg
ctttacccggatcgccaaatggtgctcgagacgaaaccgaattatctctcaacacgaatt
ctcgatatgatggctcccgtcggattcggccagcgcggtctgatcgtagcgccgccgaaa
gccggtaaaactatgctgttaaaagaaatcgctaacagcattacgacaaatcagcctgac
gctgaattgatcgttctcttaattgacgaaagaccggaagaagtaacggatattgaacgt
tccgtagcgggcgatgtcgtcagctcgacgttcgatgaagtgccggaaaatcacatcaag
gtagctgagcttgtgctggaacgggcgatgcgtctcgttgaacacaaaaaagacgttatc
atcctgatggacagcattacccgtttggcgcgtgcctacaaccttgtcatcccgcctagc
ggacgtacgctttccggcggtattgacccggctgcattccatcgtccgaagcgctttttc
ggagccgcgagaaacattgaagagggcggcagcctgaccattttggcgacggcgctcgta
gacacgggctcccggatggatgacgtcatctatgaagaatttaaaggaacgggcaacatg
gagcttcaccttgaccgttctcttgcggaaagacggattttcccggcgatcgatatccgc
cgctcaggcacacggaaggaagaactgctcgtgccgaaagagcatcttgaccgtttatgg
gcgatccgcaaatcgatgtctgattctccggacttcgcagagaagtttatgagaaaaatg
aaaaaaacgaaaacgaatcaggaattcttcgatctgatcaaccaagaatggaagcaggca
aacctttcatcatcagcccgccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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