KEGG   Brevibacillus brevis: BBR47_34380
Entry
BBR47_34380       CDS       T00879                                 
Symbol
polC
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
bbe  Brevibacillus brevis
Pathway
bbe03030  DNA replication
bbe03430  Mismatch repair
bbe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bbe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBR47_34380 (polC)
   03430 Mismatch repair
    BBR47_34380 (polC)
   03440 Homologous recombination
    BBR47_34380 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbe03032]
    BBR47_34380 (polC)
   03400 DNA repair and recombination proteins [BR:bbe03400]
    BBR47_34380 (polC)
Enzymes [BR:bbe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BBR47_34380 (polC)
DNA replication proteins [BR:bbe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BBR47_34380 (polC)
DNA repair and recombination proteins [BR:bbe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BBR47_34380 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NI HHH_6 tRNA_anti-codon RNase_H_2 DNA_pol3_a_NII HHH_3 DNA_pol_A_exo1 TF_Zn_Ribbon
Other DBs
NCBI-ProteinID: BAH44415
UniProt: C0ZF56
Position
complement(3647524..3651828)
AA seq 1434 aa
MDRLQEQKHRFSLLVKQMEVPDEWVERFFLDAQIEKLELYKQNKEWVFHFALPRMIPADV
YAVFTKRLTHTFSHLAKVDTRFRYHQKPSLDHVVEEYWDVLLAGLEPTLNSLAVTMRQAR
KQVDQQEVKVYLPTEMSVEVAKRKRADNELLAAFQKATDCSMRFSFHGEESDDAYKAFEE
QRKEEERALVEVVMTAAQQESKSSDKAEAVTTLMMGYEIKDAPIPICEIQDEERRIVIQG
TVFNVEVKELRSGRHLLTFNISDYTDSLTVKMFSRDKEDVKMLELLKDGMWVKVRGSVQH
DTFVRDLVLNANDLNQIEQVIRKDQAEEKRVELHCHTPMSALDAVASVKSLISTAAKWGH
KAIAVTDHGVVQAFPEAYSIAKKNNIKCILGMEAYVVEDGIDIVYNLQADNNISIDENTE
YVVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQWTELIDPQLQIGPKTTEITGITNEML
RGQETLDVVLRKFKDFTGDAILVAHNAEFDKAFINACAKRIGMEPWTNPFLDTLPLARLM
YKGMRNYRLGSLAKKFNVELINAHRALDDTVALAHVFQQMLKDIKEAEIKSLAELNEKSN
EEADYKSGRPFHATILVQNKEGLKNLYKLVSRSHVETFFRWPRIQRSQLSKYREGLLIGT
ACKDGELMQSILRGKSPEELKEVAAFYDFIEVQPISHYSPLLRNEEIPSLETMKGYHEKI
VQMGKELGKLVVATGDVHFLNPQDEIFRDVFLLSKGDPTAGNQPPLYFHTTDEMLEAFSF
LGEEIAKEIVVTNTNAIADMIEDISPIPDKLYTPIIEGADDELRQMCYDKARLLYGDPLP
ELVEHRLEKELNSIIKHGFGVIYLISQRLVTKSLNDGYLVGSRGSVGSSFVATMSEITEV
NPLPPHYRCPNCKHSEFITDGSIASGFDLEDKACTQCGTMYAKDGQDIPFETFLGFKGDK
VPDIDLNFSGDYQPRAHKYTQELFGADYVYRAGTIGTVAEKTAYGYVRKYADERGMTLRN
AEISRIVNGCTGVKRTTGQHPGGIIVVPDYMEIEDFCPIQFPADDNESEWRTTHFDFHSI
HDNLLKLDILGHDDPTVIRMLQDLTGMDPKTIPLDDKKTMSIFSSTEALGVSPEQIGTNM
GTLGIPEFGTKFVRQMLEDTKPTTFAELVQISGLSHGTDVWLNNAQDLIRNGTCKLPDVI
GCRDDIMVYLIYKGLEPSRAFKIMESVRKGKGVPEDDQEEMRNNNVPEWYIQSCQRIKYM
FPKAHATAYVMMAVRIAYFKVHRPLEFYATYFTVRADDFDIPLMVKGSAAIKQKIEEIEG
KGHDAQPKEKALLTVLEMALEMIERGFRFVNVDLYKSDATRFLIEGDSLIAPFNALPGLG
TNAAISIVQAREQGEFLSKEDLLSRSRISKTILEFLDEQGALQGLPESNQLSLF
NT seq 4305 nt   +upstreamnt  +downstreamnt
gtggaccgtttacaagagcaaaaacatcgcttctccctattggtcaagcaaatggaagtt
cctgacgaatgggtggagcgattttttcttgatgctcagattgaaaagctagagctgtat
aagcaaaacaaagaatgggtttttcactttgccctcccgagaatgataccagcggatgtt
tatgctgtttttaccaagcgattaacgcatacattttcacatctggccaaagtagatact
cgatttcgctatcaccaaaagccctctctcgatcacgtagttgaagagtattgggatgtc
ttgctggctgggctggagcctacgctgaactccttggcagttacgatgcgtcaagcgcgt
aaacaagtcgaccaacaggaagtcaaggtgtacttgccaacggagatgtccgttgaggtt
gccaagcgaaaacgagcggataatgagcttttggctgctttccagaaagctaccgattgt
tcgatgcgtttttctttccatggggaagaaagcgatgacgcgtataaagccttcgaggag
caacgtaaagaagaagaacgtgctctcgtcgaagttgtgatgacggctgcccaacaagag
agcaaatcgtctgataaagctgaggctgtcactacgctcatgatgggttatgaaatcaaa
gatgcgccgatcccgatttgcgagattcaagatgaggaacgccgtattgtcatccaagga
accgtgtttaacgtagaggtaaaagagctccgtagtgggcgtcatttgctcacgttcaac
atttctgactatacggattctctcacggtgaagatgttctctcgcgataaagaagatgtg
aaaatgctcgaattgctgaaagacggcatgtgggtgaaagtgcggggaagtgtacagcat
gacacatttgtacgcgatctcgttctgaatgccaatgatttgaatcagattgagcaggtt
attcggaaagatcaagcggaagaaaaacgtgtcgagcttcattgccatacgccgatgagt
gcgctagatgctgttgcatctgtaaaatcattgatctcgacggcagccaagtggggtcat
aaagccattgctgtcacagaccatggtgtcgtacaggcttttccagaggcgtattccatc
gccaaaaagaacaacatcaaatgcattctcggtatggaagcgtacgtagtcgaggatggt
atcgacatcgtttacaacctgcaagcagacaataatatttccattgatgaaaatacggaa
tacgtcgtgtttgatacggagacgacgggtttaaacgcgtcagagcataccatcatcgag
atcgctgctgtcaaaatgaaaggcgcagaaattatcgaccaatggacggagctgattgac
ccgcaattgcaaattgggccaaagacaaccgagattacggggattaccaacgaaatgctc
cgcgggcaagagacacttgatgtggtacttcgcaagttcaaggattttactggtgacgcc
attctggttgcacataatgcagagtttgacaaagcgtttattaacgcctgcgccaaacgg
attggcatggagccatggaccaatccatttttagatacgctacctttggcgcgcttgatg
tacaaagggatgcgcaattatcgattgggatcattagcgaaaaagttcaacgtcgagctc
atcaatgcccaccgtgcgttggacgataccgtagccttggctcacgtgtttcagcaaatg
ttgaaggacataaaagaagcggaaatcaaatcgctagcagagctgaatgaaaaaagtaac
gaagaggccgactataaaagcggacgcccattccatgcgaccattctcgtgcaaaataaa
gaaggtctcaaaaacctgtacaagctcgtaagtcgctcccatgtggagacattcttccgt
tggccacgaattcagcgaagccagctgtccaaataccgcgaaggcttgttaattggtacg
gcgtgcaaagacggagaactcatgcaatcgattctccgtggtaagtcacctgaagaattg
aaggaagttgcggctttttacgactttatagaagtacagccgatctcccattactcacca
ctgttgcgtaatgaagaaattccttcgctggagacgatgaaaggctaccatgaaaagatc
gtccaaatggggaaagagctcggtaagctggtcgtagctacaggggatgtgcacttcctg
aatccccaggatgagatcttccgcgatgttttcttactatcaaaaggggatccaaccgct
ggcaatcagccgccgctgtactttcatacaacggatgagatgctggaggcgttctccttt
ttgggagaagagatcgcaaaagaaattgtcgtgacaaacacaaatgccatcgcggatatg
attgaggatatcagtccgattccagacaagctgtacacgccgatcattgaaggggcagac
gatgagctgcgtcaaatgtgttatgacaaagcaaggttgttgtatggtgaccccttgccc
gaactggtcgagcatcgcttggaaaaagaattgaacagtatcatcaagcacggtttcggt
gtgatttatttgatttcacagcgtttggtaacgaaatcgttgaatgatggttatctggta
ggttcacgtggatctgtaggctcgtcttttgttgcaacgatgtctgagattacagaggta
aacccattgcctcctcattaccgctgcccaaattgcaagcacagcgagtttattacagat
ggttcaatcgcctctggctttgacttggaggataaagcatgtacacaatgtggaaccatg
tatgccaaggatggacaggacatcccgttcgagacgttcctcggctttaaaggagacaag
gtaccagatattgacttgaacttctctggtgattatcagccgcgtgcacacaagtacaca
caagagctgttcggagcagactacgtatatcgtgcaggaacgattggtacggttgcggaa
aaaacagcgtatggctacgtgcgcaagtatgccgacgaacgaggcatgacgttgcgcaat
gcggagatatcccgaatcgtaaacggctgcacaggtgtaaaaaggacgacagggcagcat
ccaggcggtattatcgtagttcctgactacatggaaatcgaagacttttgtccgattcag
ttcccggctgatgataatgagtctgaatggcgcacaacccattttgacttccactccatc
catgacaacttgctaaaactcgatattctgggacacgacgatccaaccgtcattcgtatg
ctgcaagacttgacaggaatggacccgaagacgattccactggatgataaaaagacaatg
tccatcttcagttcgacggaagccttgggggtctcaccggagcaaatcggtacgaacatg
ggaacattgggaattccagagttcggaaccaaattcgtacgacagatgctagaggacact
aaaccgactacgtttgccgagctcgttcagatttctggactctctcacggtacggacgtt
tggttgaacaatgcgcaggacttgatccgcaatggtacttgcaagctgccagacgtaatt
ggttgtcgtgacgatatcatggtgtatttgatctataaagggctagagccatctcgtgcc
tttaagatcatggagtccgtgcgtaaaggtaaaggggttcctgaggacgatcaggaagaa
atgcgtaataacaatgtgccggaatggtatatacagtcatgccagcggatcaagtacatg
ttcccgaaggcgcatgcgactgcctacgtcatgatggctgtacggatcgcctatttcaag
gttcatcgaccactggagttttacgcgacgtacttcaccgttcgtgcggatgactttgac
atcccactgatggtcaaaggctcagcggcgatcaagcaaaagattgaagagatcgagggc
aagggacatgatgcacagccaaaagaaaaggcattgctaactgttttggagatggcgttg
gaaatgatagagcggggcttccgctttgtcaatgttgatttgtacaaatcggacgctact
cgcttcttgatcgaaggtgattccctcatcgctccattcaacgccctgcctggtttaggg
acgaacgcagcgatcagtatcgtgcaagcgagagagcaaggggagtttttgtccaaggag
gacctcctatcccgatcccgcatctccaagactattttggagttcttggacgagcaaggt
gcgttgcaaggattgccagaatccaaccagctatccttgttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (58)   

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