KEGG   Babesia bovis: BBOV_II002860
Entry
BBOV_II002860     CDS       T01085                                 
Name
(RefSeq) putative u6 snRNA-associated sm-like protein Lsm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
bbo  Babesia bovis
Pathway
bbo03018  RNA degradation
bbo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bbo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    BBOV_II002860
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBOV_II002860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbo03019]
    BBOV_II002860
   03041 Spliceosome [BR:bbo03041]
    BBOV_II002860
Messenger RNA biogenesis [BR:bbo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     BBOV_II002860
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     BBOV_II002860
Spliceosome [BR:bbo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    BBOV_II002860
 Complex C
  U2 snRNP components
    BBOV_II002860
SSDB
Motif
Pfam: LSM VGCC_beta4Aa_N Hfq Apc5_N
Other DBs
NCBI-GeneID: 5478038
NCBI-ProteinID: XP_001609809
UniProt: A7ATF6
Position
2:complement(672119..672604)
AA seq 99 aa
MLFFNFFQSLAEKGASVTVELKNDLQLTGRLHAVDQYLNFKLSNVTASDTERYPHLLSVV
NCFVRGSVVRYVYLNSSDVNTEELQELCRREAMKSNVDK
NT seq 300 nt   +upstreamnt  +downstreamnt
atgttattcttcaacttcttccaatcgcttgcggagaagggcgctagtgtgacggttgag
ttaaagaacgatctacagctgactggccgtcttcatgctgtggaccagtacctcaacttc
aagctgagcaatgtgacggccagtgacaccgaacgttaccctcacctgctgtcggttgtg
aattgctttgtgagaggttcagtggtgcgttacgtctacctcaatagctccgacgtcaac
actgaggagctccaggagctgtgtcgccgcgaggccatgaagtctaacgtagacaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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