KEGG   Babesia bovis: BBOV_III002070
Entry
BBOV_III002070    CDS       T01085                                 
Name
(RefSeq) Replication factor RFC1 C terminal domain family protein
  KO
K10754  replication factor C subunit 1
Organism
bbo  Babesia bovis
Pathway
bbo03030  DNA replication
bbo03410  Base excision repair
bbo03420  Nucleotide excision repair
bbo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBOV_III002070
   03410 Base excision repair
    BBOV_III002070
   03420 Nucleotide excision repair
    BBOV_III002070
   03430 Mismatch repair
    BBOV_III002070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbo03032]
    BBOV_III002070
   03400 DNA repair and recombination proteins [BR:bbo03400]
    BBOV_III002070
DNA replication proteins [BR:bbo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    BBOV_III002070
DNA repair and recombination proteins [BR:bbo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     BBOV_III002070
SSDB
Motif
Pfam: RFC1 AAA BRCT Rad17 RuvB_N DNA_pol3_delta AAA_18 nSTAND3 AAA_16 AAA_17 Zeta_toxin PTCB-BRCT AAA_28 AAA_14 AAA_assoc_2 AAA_2 DUF815 DUF4196 AAA_22 NTPase_1 AAA_6 Sigma54_activ_2 AAA_33 AAA_5
Other DBs
NCBI-GeneID: 5479587
NCBI-ProteinID: XP_001611342
UniProt: A7AMJ0
Position
3:483810..486733
AA seq 944 aa
MDIRSFFGGVPKSAVSPSPGPKKASTSDQSSDLNVLKKKSIDKEKNVKQPLKHVPAVKKQ
PEKSEEKASDESILPSRRKRLKKVVDSDDDFSTSSPASNRKEVTIPLDESPKVKVRHLLW
DNDDGIPKSPSDNKLKSSELQLDIECYTTNDKRLINPAANINTSSMPSVDLDSYLHSIGL
GKSSDANSVPMSHTSPKSNEPVDSVKVDEKRSLPEVTSALKSPKKSSTQMTSNLESPYPK
VSSPTQIISTQSLLSPSKSPYKPRHSLHTGVANSPKASQPLNLFDDDETLPSSPVKSPKE
VTPHGASNVNKEKVVGMRFVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYLVYGEK
LEDGRHYTTGSKYKKALEFNKTKDAGIQLLNESEFLALIDYQNVSSRLTAVKTIPDESVH
TIATSTDNTSLPLCEKYRPIHLTDLIGNEANIRKVVDWLKSWSPGSLPACALLSGPPGVG
KTTTAKIVAAECGYECVEFNASDLRNKSAVEKISMLVTGGQSFSFLGECRMKKSLVLLDE
IDGMGAGDRGGLQAVVALLPKARCPIICICNDRHNQKMTTLGGKSLDVRFSSPTLMQFRA
RIASVCAAEGITVPQDTVAQLYEQGGGDFRHALNAIEFNSLGDSGSKGHALSGSDAKDIG
HTKNLFEATGRLFSARSGSTEKRYRELEQIFFIDYNMMPLMAQENYIKFIPVNNRALSIL
QALSQSFVEADRVEEFLKRTQSFSLLPDLAILSSILPAMVISTAGGSCRERLMFPQYLGR
FSTTSKNKRFLSDIGKHMGHRSLIRSYPLVIDGYLDLLYMKIMGELSKGDVDATAEMIEG
FGLNKELAVDALVSLRLKSLENFYDKIDTRKKTALTRRLNEQTVKLAPTKRKKEKIDYIV
DDDADAGPESDTESSDSDSGLLKKNTRAVKKRATTGAASRRGKK
NT seq 2835 nt   +upstreamnt  +downstreamnt
atggacatccgatcatttttcggtggagtgccaaagtcagctgtttctccttcaccaggg
cctaagaaggcttctacatcggatcaatcatctgacttgaatgtgctaaagaaaaaatcc
attgacaaggagaagaatgttaaacaacctttaaaacatgttcccgctgtaaaaaaacag
ccagagaagagtgaagaaaaagcatccgatgaatcgattttgccatctcgacgaaaacgt
ctgaagaaagtggttgactctgatgatgatttttccacctctagccctgcttcaaatcgt
aaagaggtgactatacctttggatgagagccctaaagtcaaggtgcgtcatttgttatgg
gacaacgatgacggtattccaaaatcacctagcgacaacaagcttaaatctagcgaactc
cagctagacattgaatgttacaccactaatgacaagcgtctcatcaacccagcggccaat
ataaatacatcttcgatgccaagtgttgatttggacagctatcttcattctatcggtctt
ggcaaatcttctgatgccaactctgttccgatgtctcatacatccccgaagtctaatgaa
cctgtggatagcgtaaaggttgatgaaaaaaggtccttgcctgaagttacatctgcatta
aagtctcctaaaaagtcgagcacgcaaatgacttcgaatttggaatcaccttaccccaag
gtgtcttcccctactcaaataatatccacacaatctcttttatcaccatcgaaatcgcca
tataaaccaagacattcgttgcatactggtgttgcaaattccccaaaagcttcgcagcct
ttgaatcttttcgatgatgatgaaacactaccttcctctccggtaaaatcgcctaaggag
gttacaccgcatggtgcttccaacgtaaataaagaaaaggtggttggtatgcgttttgtt
ttcactggtgtgcttgatgctatagatcgtgattctgtggttgagttagtacgttctttg
ggcggtctgacaacaggttctgttagttcaaagactaactatttggtatatggtgagaag
cttgaggatggtcgtcattacactactggtagtaagtacaagaaggcattggagttcaac
aagaccaaggatgctggaatccaacttttgaatgaatctgaattccttgctcttatagat
taccaaaatgtcagttcacgtttaacggcggttaaaactattccggatgaaagcgtgcat
actatcgctacatcaacagacaacacgtcacttccactttgtgaaaagtaccgtcccatc
catttgactgacctgatcggtaacgaggccaatattcgtaaggtggtagactggttgaaa
tcatggtctccaggatctctacctgcctgtgctttactctctggtcctccaggtgttggg
aagaccactactgccaagatagttgctgctgagtgtggttacgagtgcgttgagttcaac
gcctctgatttgcgtaacaaatctgcggttgagaaaatatcgatgttggttactggcggt
cagtcatttagttttttgggtgagtgtcgtatgaagaagtcacttgttctcttggatgaa
attgacggtatgggtgctggtgaccgtggtggtcttcaggcggttgttgccttacttcct
aaagctcgatgccctataatttgcatatgtaacgaccgtcacaatcagaaaatgacgact
cttggtggcaagagtttggacgttcgtttttcatcgcctacattgatgcagttccgtgct
cgtattgctagtgtatgtgctgctgagggtattacagtcccccaggatacggttgcgcag
ctatatgaacaaggtggtggtgatttcaggcacgcgttaaatgctatagagttcaattca
ttaggtgactctggttctaagggtcatgcattatctggcagcgatgccaaggacattggt
cacaccaagaatctttttgaggcaactggtcgtttattttcagctcgttctggttctacg
gaaaagcgttacagggagttggagcagatattctttattgattacaacatgatgcctcta
atggctcaggagaactacatcaagttcattcctgttaataatcgtgccttgtctattctt
caggccttgtctcaatcattcgttgaggctgaccgtgttgaagagtttctaaagcgcact
cagtcattctcgttgttacctgatttggctattctatctagtatattacccgcaatggta
atatctaccgctggtggttcatgccgtgagcgattaatgtttccacagtatttgggtcgc
ttttcaactacatccaagaataagcgttttctaagcgatattggaaaacacatgggtcac
cgttcgctaattcgttcatatcctttagtgattgacggttatctggatctgttgtacatg
aagataatgggcgagttgtccaagggtgatgtggatgccactgcagagatgatagaaggt
tttggtttaaacaaggagcttgctgtggacgctttggtatcactacgtttgaaatcgcta
gaaaacttttacgacaagatcgatacgcgtaaaaagactgcgttgactaggcgtttgaac
gagcagactgttaagctggctccgactaaacgtaagaaggagaagatagactacatcgtg
gacgacgatgctgatgcaggtcctgaatctgatacggaatcttctgacagtgatagcggt
cttttaaagaagaacacgcgtgctgttaaaaagcgagcaacgacaggtgcagcatcccgc
cgtggtaagaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (24)   
   Pfam (24)   
All databases (79)   

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