KEGG   Bifidobacterium bifidum PRL2010: BBPR_1258
Entry
BBPR_1258         CDS       T01340                                 
Symbol
gyrB
Name
(GenBank) GyrB DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
bbp  Bifidobacterium bifidum PRL2010
Brite
KEGG Orthology (KO) [BR:bbp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbp03032]
    BBPR_1258 (gyrB)
   03400 DNA repair and recombination proteins [BR:bbp03400]
    BBPR_1258 (gyrB)
Enzymes [BR:bbp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     BBPR_1258 (gyrB)
DNA replication proteins [BR:bbp03032]
 Prokaryotic type
  DNA Topoisomerases
   BBPR_1258 (gyrB)
DNA repair and recombination proteins [BR:bbp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BBPR_1258 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c Ribosomal_L12
Other DBs
NCBI-ProteinID: ADP36311
UniProt: A0A0H3EB39
Position
complement(1471830..1474142)
AA seq 770 aa
MPKQEYGADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHIT
VTLHDDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS
SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYSDTDPEHPSPDAPFKRTRKNRPTELEI
IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLRITVIDENVPETG
DDSVDEMMEVDAAQTPADDGTGLMDAADIVSAADTAVEDTVEAGEAEARSAAVSAAVETA
KVDAARHTHARVEEFRHTGGVKDFVDFLSAGEAVSDIWRITGEDTYEEETQAVGEGGELH
AQKVTRKCGVDIAMRWTNGYDTTMRSFVNVVETPGGGMHVDGFLMGLTKQIRKAVEDNAR
KLKVNLKDSNMRVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKPIVTRMTDKQF
GEMITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESAAMPSKLSDCQPG
NDDVAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLNNKECAAIIQV
VGAGSGAGFDIEQSRYHKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPL
HRIALAGSHKGEFIYTYSDDELAGRLADLERRHISYNPDIQRYKGLGEMDADQLADTTMD
PRTRMLRRIRMEDAAQASEIFSLLMGDDVPPRKAFIVDNADDFDRSKIDT
NT seq 2313 nt   +upstreamnt  +downstreamnt
atgcccaaacaggaatacggtgccgacagccttaccgtgctcgaaggcttggacgcggtg
cgcaagcgccccggcatgtacatcggcaccaccgacagccagggtctgatgcactgcctg
tgggagatcatcgacaacgcggtggacgaggcgcttgcgggcgcctgcgaccatatcacg
gtgaccctgcacgacgacggctccgtggaagtggccgacaacggccgtggcatccccgtc
gacgtcgagccgaagaccaagctcaccggcgtcgaggtcgtgctgaccaagctgcatgcc
ggcgctaagttcggcaacgcgtcctataacgcggccggcggcctgcacggcgtcggctcg
tccgtcgtcaacgcgctgagctcgcgtctggacgtcgaggtcgaccgcgacggcaaaacc
catcacatggccttccaccagggtcatccaggcgtatattccgacaccgatcccgagcat
ccgtccccggacgcgccgttcaagcgcacccgcaagaaccgcccgaccgagctggagatc
atcggcaaggtcagcccgaagaccacgggcacgcgcatccggtactgggccgatcccgaa
atcttcaacgacaccgccgaattcagctacgagcagctcatcgaccgtgtgcgccagacc
agtttcctggtgccgggactgcggatcaccgtcatcgacgagaacgtgccggaaaccggt
gacgacagcgtcgacgagatgatggaagtcgacgccgcacagacgcccgccgacgatgga
accggcctgatggacgctgccgacatcgtctctgcggccgacacggccgtcgaagatacc
gttgaagcgggtgaagccgaagcgcgatctgccgcagtctccgccgcggtcgagacggcg
aaggtggacgcggcccgccacacgcacgcccgcgtcgaggaattccgccacaccggcggt
gtcaaggacttcgtcgatttcctgtccgcgggagaggcggtatccgacatctggcgcatc
accggcgaggacacctacgaggaggagacccaggcggtcggcgagggcggcgaactgcac
gcccagaaagtcacccgcaaatgcggcgtcgacatcgcaatgcggtggaccaacgggtac
gacacgacgatgcgcagcttcgtcaacgtggtcgagacgcccggcggcggcatgcacgtc
gacggtttcctcatggggctcaccaagcagatccgcaaggccgttgaagacaacgcccgc
aaactcaaggtgaacctcaaggactcgaacatgcgcgttgagcgcgacgacattctggcc
ggactcgtggccgtcgtcaccgtgcgcatcgccgagccgcagttccaggggcagaccaag
gacgtgctcggcaccgctcccgtcaagcccatcgtcaccaggatgacagacaagcagttc
ggcgagatgatcacgggctccaaacgcggctacaaggagcagtccggtcgtgtgctggag
aagattgtcggcgagatgcacgcccgcatccaggcgcgcaagaccaaggaggtcacgcgc
cgcaagaacgcgctcgaatccgccgccatgccgtcgaaactgtccgactgccagccgggc
aacgacgatgtggccgagctgttcatcgtcgagggcgactccgcgctcggcacggccaag
gctgcgcgcaattccggattccaagcgctgctgccgatccgaggcaagatactcaacgtg
cagaaggcatcgttgagccagatgctcaacaacaaggagtgcgccgcgatcatccaagtg
gtcggtgcgggatccggcgccggtttcgacatcgagcagtcccgctaccacaaggtcatc
atgatgaccgatgccgacgtggacggcgcccatatccgcatcctgctgctcacgctgttc
taccggtacatgcgcccgctcatcgagcacgggtacgtctacgccgccgtgccgccgctg
catcgcatcgcgctcgccggctcgcacaagggcgagttcatctacacgtactccgatgac
gagctcgccggccgtctggcggacctcgaacggcgacacatctcgtacaatcccgacatc
cagcgctacaagggtctgggtgagatggacgccgaccagctcgcggacacgacgatggat
ccgcgcacgcgcatgctgcggcgcatccgcatggaggatgcggcacaggcgtccgagata
ttcagcctgctcatgggcgacgatgtgccgccgcgcaaggcgttcatcgtcgacaacgcc
gacgatttcgaccgctccaagatcgacacctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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