KEGG   Bifidobacterium bifidum PRL2010: BBPR_1342
Entry
BBPR_1342         CDS       T01340                                 
Symbol
recQ
Name
(GenBank) RecQ ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
bbp  Bifidobacterium bifidum PRL2010
Pathway
bbp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBPR_1342 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbp03019]
    BBPR_1342 (recQ)
   03400 DNA repair and recombination proteins [BR:bbp03400]
    BBPR_1342 (recQ)
Enzymes [BR:bbp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BBPR_1342 (recQ)
Messenger RNA biogenesis [BR:bbp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BBPR_1342 (recQ)
DNA repair and recombination proteins [BR:bbp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BBPR_1342 (recQ)
SSDB
Motif
Pfam: DEAD HRDC Helicase_C RecQ_Zn_bind RQC Helicase_Sgs1 ResIII DUF3220
Other DBs
NCBI-ProteinID: ADP36392
UniProt: A0A0H3EB28
Position
complement(1579243..1581243)
AA seq 666 aa
MTDQVAALGALKRYFGYDSFRPGQSGLVDAILAGRDVLGVMPTGAGKSVCYQIPATLLPG
VTIVISPLISLMRDQVDALNDAGIPAAYVNTTQGGDEQAMVLAQAAQGDIKLLYVAPERL
ETERFRNFATRVPISLVAVDEAHCVSQWGQDFRSSYLGIGEFIAGLPARPTVAAFTATAT
ERVRRDIIGILGLNAPQVTVTGFDRENLYFDVLKIETKYKAAWVARYVAEHPDESGIVYC
ATRKETEALAAALNHTVPALRGAAGGSAADSVMRDGPVAVAYHGGMPANVRNQAQRDFVT
DAVPVVVATNAFGMGIDKSNVRYVIHHNMPESIEAYYQEAGRAGRDGEPSRCTLLWNESD
IVTRRRLLDMDNDNERLTPEERETVRMSKRRLLDGMIGYCRTTDCLHVYMTRYFGENTSR
TGTCTGGCTNCDSTFETLDVTDIARSISRCVHDAMYDYDDQGRPACGPVRQGLGSGKIVA
ILRGSKAKDLIARHLDRCPSYGRLHDAPEARIRDVLSQMATDGFLSIAEGRLPIVGFGQR
AAETVAPEFRYEIKRVERKAAGAGTGVTSRTDSSSKSAASDGPALGSYAPDDENETLFQK
LRELRLSIARENSLPPYMVFNDRTLRDMARLRPITDAQFLAVNGVGDSKLAKYGKRFMEA
IAGFDD
NT seq 2001 nt   +upstreamnt  +downstreamnt
atgacagatcaggtggcggcgctgggggcgctcaaacggtatttcggctatgactcgttc
cgaccggggcagtcagggctcgtcgacgcgatcctcgccgggcgcgatgtgctcggcgtg
atgccgactggcgctggaaaatccgtgtgctaccagattccggccacgttgctgcccggc
gtcaccatcgtcatctccccgctgatctccctgatgcgcgaccaggtagacgcgctcaac
gacgccggcatcccggccgcatacgtcaacaccacccagggcggcgacgagcaggccatg
gtgctggcgcaggccgcgcaaggcgacatcaaactgctgtatgtggcccccgaacgactg
gaaaccgaacggttccgcaacttcgccacacgcgtgccgatctcgctggtggccgtcgac
gaagcccactgcgtgtcgcaatggggacaggatttccgttcgtcgtacctcggcatcggc
gagttcatcgccggcctgccggcccggccgaccgtagccgcgttcaccgccaccgccacc
gagcgcgtccgccgcgacatcatcggtatcctggggctcaacgccccgcaagtcaccgtc
accggattcgaccgggagaacctgtacttcgatgtgctcaagatcgagaccaaatacaag
gcggcatgggtcgcacgatacgtagccgagcatccggacgaatccggcatcgtctactgc
gccacgcgcaaggagacggaggcactcgccgcggccctcaaccacaccgtgccggcgttg
cgcggagcggcgggcggcagtgcggcagattccgtcatgcgcgatggccccgtcgcggtc
gcctaccacggcggaatgccggccaacgtacgcaaccaggcgcaacgcgacttcgtcacc
gacgccgtgccggtagtcgtcgccaccaatgcgttcggcatgggcatcgacaagtcgaac
gtccgctacgtcatccaccacaacatgccggaaagcatcgaggcatactatcaggaagcc
ggtcgcgccggccgagacggggagccgagccgatgcacactgctgtggaacgaatccgac
atcgtcacccgtcggcgcctgctcgacatggataacgacaacgaacgactgaccccggaa
gagcgcgagaccgtgcgcatgagcaagcgccgtctgctggacggcatgatcggctactgc
cgtaccaccgactgcctgcacgtctacatgacccgctacttcggcgagaacacgtcaaga
accggcacatgcacgggcggttgcacgaattgcgacagcacgttcgaaacccttgacgtg
accgacatcgcgcggtcaatcagccgatgcgtgcacgatgccatgtacgattacgacgat
caggggcgaccggcgtgcggccccgtgcgccaaggcctcggctcggggaaaatcgtggcg
atactgcgcggctccaaggccaaggacctcatcgcgcggcatcttgacaggtgcccgagc
tacggtcgtctgcacgatgcgcccgaagcccgaatccgcgacgtgctcagccagatggcc
accgacggattcctctccatcgccgaagggcggctgccgatcgtcggcttcgggcagcgc
gcggcggaaacggtcgcgcccgaattccgatatgagatcaaacgggtcgagcgcaaggcc
gccggcgccggaacgggcgtgacgtcacggaccgattccagttcgaaatccgcggcgtcg
gacggcccggcattgggctcgtacgcccccgacgacgagaacgagacgttgttccagaaa
ctgcgcgaactgcgtctgtccatcgcccgcgagaacagcctacccccatacatggtgttc
aacgatcgcacgctgcgagacatggcccgtctccgccccatcaccgacgcgcagttcctc
gccgtcaacggcgtgggtgacagcaagctggccaaatacggcaagcgattcatggaggcc
atcgccggcttcgacgattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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