KEGG   Burkholderia cenocepacia HI2424: Bcen2424_2670
Entry
Bcen2424_2670     CDS       T00415                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
bch  Burkholderia cenocepacia HI2424
Pathway
bch03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bch00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bcen2424_2670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bch03019]
    Bcen2424_2670
Enzymes [BR:bch01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Bcen2424_2670
Messenger RNA biogenesis [BR:bch03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Bcen2424_2670
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA Ric8 DegT_DnrJ_EryC1 Sacchrp_dh_NADP CMS1 CARD_2
Other DBs
NCBI-ProteinID: ABK09420
Position
1:2958813..2960273
AA seq 486 aa
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQQPRGGGSGGGNRQPRAGGSGQPAAK
RDGNAQPKAGQPKAAAQQKAAKPRTQGGAAGNGGRPAGGGNGARPASGNAAHPNRNRSSR
SGQRGH
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgtctttcgaatctctcggcctggccgaaccgctggtcaaggcggtcaacgagctcggc
tatacgtcgccgactccgatccagcagcaggcgatcccggccgtcctcggcggcggcgac
ctgctcgccggcgcacaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgagcaccgtggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtccgtgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgaccac
atgcagcagaagaccatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgggtgctcgcgaagctgccgccg
cagcgtcagaacctgctgttctcggcgaccttctcggatgaaatcaaggcgctcgccgac
agcctgctcgactcgcccgcgctgatcgaggtcgcccgccgcaacacgaccgccgagagc
gtcgcgcagaagatccacccggtcgaccgcgaccgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgagcagttgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgaccagctgccgcacgtcgtcaac
ttcgatctgccgaacgtgcccgaggattacgtgcaccgcatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagatcccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgcgaagccggagccgatccagcaacgccgcgggcagcagcaaccgcgcggcggt
ggcagtggtggcggcaatcgccagccgcgtgccggcggctcaggccagccggccgcgaaa
cgcgacggcaacgcgcaaccgaaggccgggcaaccgaaggctgcagcgcagcagaaggcc
gcgaagccgcgcacgcaaggcggcgccgccggcaacggcggacgtccggcaggtggcggc
aacggcgcccgcccggcaagcggcaacgccgcgcatccgaaccgcaaccgttcgtcgcgc
agcggccagcgcggtcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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