KEGG   Brachypodium distachyon (stiff brome): 100828356
Entry
100828356         CDS       T01717                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100828356
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100828356
Enzymes [BR:bdi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     100828356
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100828356
SSDB
Motif
Pfam: CAF1 CoV_S1
Other DBs
NCBI-GeneID: 100828356
NCBI-ProteinID: XP_003581331
UniProt: I1IYM9
Position
5:complement(16547395..16552034)
AA seq 729 aa
MQSSRRLARAPPPRTLFTRLYSSSSSLLPANGAGDGAGSSRVGGVAVKQVTRGNLAEALE
ELRARVRDAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAQRFAALQLGVCPFR
WDPAKSAFVAHPHNFFIFPRKELPDDISSHEFLCQTTSIDFLAKYQFDFNTCFHEGISYL
SRAQEEEALQKLNVLYHDGIASPNTSEEEDVPLRSTADLLFTERMKIKFKEWRDVIISNP
RMDNHWLECNKFSTHQFQTVFFKMHPAILLNGFTSHQLKLIQQVLRKDFKDLMYISTFGE
DNTSEKRVVYTDDSNDSVSLMKDLQEDLLRSREARVKSAVGIRHVIDLLASERKLIVGHS
CFLDIAQVYSKFIGPLPSTVKEFALGIHKILPYIADTRHLMSASDSVQYLMRQKSKSLSS
VFSLLCPAFHSTVAEPSTLSPVRIEVEADETMLSCFASGAKHEAGYDAFMTGCVFAQLCD
HLDVKFEHLPPRDNLAMNNKLQKYINLLSPSFNSGTSLDLSTGMERPDTGYKRRYPTVLY
DNVVLIWGYQSELRPRDIKDCICKVFGPASVTTIFSIDSTAVLVQFSKQESVNDFMDLKA
ALEKTDSAISVLHPLSTILEGGKTRAANYDTYRDICGSSVSKYFFADQAEAVCSSSKSLL
KCENIDAADTPGVILNESILDETIPTSEKHAGGTKNVSKKEDDSEISCQDILDALQDGKA
LFDKRTRST
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgcagagcagccgccgcctcgcccgcgcgccgccgcccagaaccctgttcacccgcctg
tactcctcctcctcctccttgctgcccgcgaacggcgccggggatggagcaggaagcagc
agggtcggtggggtcgcggtcaagcaggtgacgcgggggaacctggcggaggcgctggag
gagctgcgggcgcgggtgcgcgacgcggcgttcgtggggctcgacctggagatgagcggc
gtcacgagcgcgccatggcgggacaccttcgagctcgaccgcgccgacgtccggtacctc
aagctccgcgactccgcgcagcgcttcgccgcgctacagctcggcgtttgccccttccgc
tgggaccccgccaagtctgccttcgtcgcccacccgcataacttctttatcttccctcgc
aaggagcttccagatgacatttcatctcacgaatttctctgtcagaccacttcaattgac
ttcttagcaaaataccagtttgatttcaacacgtgcttccatgaaggaatatcttattta
tccagagcacaagaagaagaggctcttcagaaattaaatgtgttgtatcatgatggaata
gcatctccaaacacgtctgaagaggaagatgtgccattaaggagtactgctgatcttctt
ttcacagagagaatgaaaatcaaattcaaggaatggcgtgatgtgataatcagcaaccca
agaatggataaccattggctagaatgcaataaattcagcacacaccaatttcagacagtt
ttcttcaaaatgcacccagctattttactcaatggattcacatcgcatcagttaaagtta
attcaacaggttttaagaaaagattttaaagacctcatgtatatttcaacatttggtgag
gataacacgtccgaaaaaagagtagtttatacagatgatagtaacgacagtgtatcattg
atgaaagatttacaggaagatttactcagaagtagagaagcaagagtcaaatcagcagta
ggaatacgccatgtcattgatcttcttgcctcagaaaggaaattgattgttggtcatagt
tgtttcttagacattgcacaagtctacagcaaatttattggtcctcttccatcaaccgtg
aaggagtttgccttgggtatccacaaaattttgccgtacattgcagatactaggcatctt
atgtctgccagcgactcggttcaatatctgatgaggcagaaaagcaaatctctgtcctca
gttttctcattgttgtgccctgcatttcattcaactgttgcagagccatctaccctttct
cctgtgagaattgaagttgaggcagatgaaacaatgttatcttgctttgcttcaggtgct
aagcatgaagcagggtatgatgctttcatgactggatgtgttttcgcgcagctgtgtgat
catcttgatgtcaaatttgagcacctcccacctagggacaacttagcgatgaataataag
ctgcagaaatacatcaatcttctgtccccaagctttaacagtggaacatcacttgattta
agtactggcatggagagaccagatacaggttataagcgtagatatcctactgttttgtat
gataatgttgttctcatctggggataccagtctgagctaagaccaagggatataaaggat
tgcatctgcaaagtgtttggtccagcttcagtcacgacaatcttctcgattgattccact
gctgtccttgttcagttcagtaaacaagagtctgtaaacgatttcatggatctgaaggct
gcgttggagaaaacagatagtgctatatcagtcttgcaccctctgtcaactatattggaa
ggaggcaaaacacgagctgcaaactatgacacctacagagacatttgtggctcatctgta
tcgaagtatttctttgcagaccaagctgaagctgtctgttcaagttcaaagagtctgctc
aaatgtgagaacatagatgctgctgatacacccggagtaatactaaacgagagtatcctt
gatgaaactatacctacctcagaaaagcatgcaggcggaacaaagaatgtttccaagaag
gaagatgatagtgaaatttcatgccaagatatcttagatgcactacaagatggcaaagca
ttattcgacaaacgaacaagaagcacgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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