KEGG   Brachypodium distachyon (stiff brome): 100828943
Entry
100828943         CDS       T01717                                 
Name
(RefSeq) ubiquitin-60S ribosomal protein L40-2 isoform X2
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03010  Ribosome
bdi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    100828943
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100828943
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:bdi03011]
    100828943
   04121 Ubiquitin system [BR:bdi04121]
    100828943
Ribosome [BR:bdi03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    100828943
  Archaea
    100828943
Ubiquitin system [BR:bdi04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   100828943
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 zf-C4pol TBK1_ULD Ubiquitin_5 Dsc3_N Plexin_RBD DUF2604 OTU1_UBXL
Other DBs
NCBI-GeneID: 100828943
NCBI-ProteinID: XP_003578682
UniProt: I1IT17
Position
4:43363560..43365472
AA seq 129 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGIIEPSLQALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQ
LRPKKKIKN
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagaccctcaccgggaagaccatcaccctcgaggtcgagagcagc
gacaccatcgacaatgtcaaggccaagatccaggacaaggaaggcatcccgccggaccag
cagcgtctgatcttcgccgggaagcagctggaggacggccgcaccctcgccgactacaac
atccagaaggagtccaccctccacctcgtgctccgcctccgcggtgggatcatcgagccg
tctcttcaggcccttgcccgcaagtacaaccaggagaagatgatctgccgcaaatgctat
gcacgcctgcaccccagggctgtcaactgccgcaagaagaagtgtggtcacagcaatcag
ctgaggcccaagaagaagatcaagaactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (16)   
   RefSeq(nuc) (2)   
   GenBank (7)   
   EMBL (7)   
Protein domain (12)   
   Pfam (12)   
All databases (42)   

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