KEGG   Brachypodium distachyon (stiff brome): 100838348
Entry
100838348         CDS       T01717                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03018  RNA degradation
bdi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100838348
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100838348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100838348
   03041 Spliceosome [BR:bdi03041]
    100838348
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100838348
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100838348
Spliceosome [BR:bdi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100838348
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 100838348
NCBI-ProteinID: XP_003579620
UniProt: I1IX44
Position
5:complement(10867782..10872960)
AA seq 97 aa
MSTGGADKSGSGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKQAVTDGA
NT seq 294 nt   +upstreamnt  +downstreamnt
atgagcaccggcggcgcggacaagtccggcagcggcggaggaggtggggcggtgaagacg
ccgtcggacttcctcaagtcgatcaggggccgccccgtcgtcgtcaagctcaattccggc
gtcgactaccgaggtatcctggcttgtctggatggttacatgaacatcgcaatggagcaa
actgaggagtatgtgaacggccaactgaagaacaaatacggcgatgctttcataaggggc
aacaatgttctatacatcagtacctcgaagcaggccgtcacggatggagcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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