KEGG   Brachypodium distachyon (stiff brome): 100840701
Entry
100840701         CDS       T01717                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100840701
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100840701
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100840701
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100840701
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT Glyco_hydro_84_hel
Other DBs
NCBI-GeneID: 100840701
NCBI-ProteinID: XP_010229360
Position
1:74724044..74746825
AA seq 2414 aa
MLPPSPDVLAAEVRLMLQGATDSNRDSIRRELCQLVDNGLDGCVLLLQVCLDEVLLNAGE
EKNFQWKHDLLSAIFRYCLDKTYFCTCFCEAVMMITSTDGLLETLSSVLELSTAEKVGIG
LALSDSQNSVMKQKGQQFAIAQIEELCLNPIQSVSNDQIHEIVVFLQQTDGLSKHMDTFS
SITSLLEVGQSPFFAPIPKKQRDIQSTNPSRHLDLYFNSTSADFESLLSEIGKEISMADT
VTELGYGCTVDIAHCMEMLSAFEPLDNVAISKLLGAVIGNHNSLGEAQNSTHATFVSAIR
NSPTSNSPQLTTWNTDVLVDSINAVAPSTNWVQVMENLDHGGFSIPDEAGFYLLMSIYAR
ACKDRFPLHAVCGSMWTNTDGQISFLKHAVSAPATMFTFAHSSRLLALPEFASLSPGNSA
WFCLDLLEVLCQLAEVGHTKPVREMLEYPLEHCPELLLVGLGHINTAYNLLQFEVLSCVF
PAILKDAAKSNVVNSLWHINTCLTLRGFVDAHSDPSCLLRIVDVCQDMKILSAVLGSTPF
AFSIKLAAAASWKDHNHLEKWLTEKLIIYKDSFLKECVNFLKETMSAASYVVEGTMEQPQ
VSVINKYLEACHPFMKVLQSHLGLLLSNHLSDELRELYTLYESRNHGSVVRDTPTSEGGS
DDVEVEANAYFQQMFSGQISIDSMIQMLARFKESPEKREQLIFNCMITNLFEEYKFLTKY
PDKQLKLAAVLFGSLIKHQLVAHLGLGIALRAVLDALRKSLDSKMFLFGTIALEQFMDRV
VEWPQYCNHILQISHLRENHADMVYAIERALASISSGQNEPNVGNLLSAEQHVSGSSSME
TMEVSEPSWQFMGTSPTQLGRTLSSFPLQQRQPEPGVLGDRSMVSMGTSQNNSTLPSQPP
VPLTPADSTIDLKATALAHSTNMATTGFLRPRSTPTGLPRQHSYVTGFGAALNIETLVAA
AEQRDRPIETPPSEVQDKILFMINNISTSNLEAKANEFNQVLQEQYYPWFAQYMVMKRAS
IEPNFHELYLKFFAKLNSRSLSKEMLKATYENCKVLLRSDLIKSSSEERSLLKNLGSWLG
KFTIGRNQTLRAKEIDPKSLIVEAYEKGLMIAVIPFTSKILEPCQSSIVYRPPNPWTMGI
LSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPTSLLRDREREVEGNPDFSNKDVA
SQIPVAAEVSSGIIPPMNHAELQPQVNSTSRAMSLPSILNQYTAPVRLPPNSMAEDDKIA
SLMPEQVPLHTFTQTPLASLSPSPLSLSQLLSLIPHEEIHFKINTKLGSLGSQLQFSKII
GVALDKAIKEIILPVIERSVTTASKTTKELVLKDYATKSDINSANRSGRLMVGTLAGSLA
HVTCKEPLRVALSSHLRSLIQNLTSNSETVDQVTDILINDNLDLGCAIIESVATRQAVDL
IDGEITQSFSQQRRKRDAAGPAYYDSFIYAQVPFAPVPEVLRTKPESAAQQRVYEEFVHV
WQRRSQSIGAAGSSSASTAAVSSNFGVPRAYSPNSAPATSSTILTSQTAHLTLTQPTELV
SEELIPGAAQLSSDSPSQIGTSDSSGWLGGTIASASTSPPPVTSNDLPVGGTTVTADDLS
AMMFPPSTISVDNFGLVLPDPLNTDDALKRYRLISQKLEALIAKDGKDSEIQSVIAEVPD
LLVKCVSPDEAALAVAQKVFKSLYDNTSNSGRVMWFVATLVAIRDVCKLVVKELTNWVIF
SDDEKKFNIEIIIALIRSDLLSLGEYNDYLARLIDGGRNRIATEFAMSLVQKLISQNSVC
ISELFSVVDALSKISRRPGSPESLQQLIEKSRHKANTAPTFDFGMDEKVRQPKDKKVLSS
QTNKEENSVNDITLAESVTFHDQVAHLYTEWCQVCDHPSACDAAYSHFVMQLEHMGLLKG
DESTERFIRILTELAVTRSLVSEQIVAPGGLSQQSSQQPHISYFPIDSYSKLVSMVLKHS
SVEMGPNEGSLLPKILSVTVKIIQKDAEEKKSLFNPRPFFRLFINWLNDLSSSDPHHDGA
NFQVLTAFANAFHLLQPLRIPSLSFAWLELVSHRTFMPRLLMCNSQKGWPFFQRLLVDMF
KFMEPYLRNADLLEPVRLLYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPTSCIQMRNVI
LSAYPHSMRLPDPSTPNLKIDLLAEISIAPRIMSDIGGALKLKHMKTDVDEYLKRPEGSS
FLSDIKQKLLLPQNEAIVAGTCYNVPLINSLVLYVGIQAVQLQENKVNALATTPMDIFQI
ATATEIFRNLATNLDTEGRYLLLNSIANQLRYPNNHTHYFSFIVLYLFAEATQDKIQEQI
TRILLERLIVKRPHPWGLLITFTELVKNPRYNFWNRSFTHSAPDIQKLFEAAAKSCAAKA
AVEGVPDVNRSTMA
NT seq 7245 nt   +upstreamnt  +downstreamnt
atgctcccgccgagccctgacgtcctcgccgccgaggtgcggctgatgctccagggcgcc
accgactccaaccgcgattccattcgccgcgagctctgccagttagttgacaatggtctg
gatggatgtgttttgctgctccaagtctgtttggatgaagtgttgttgaatgccggggag
gagaagaacttccagtggaaacatgatcttctctccgccattttcagatattgtctggat
aaaacatacttctgtacttgtttttgtgaagcagtgatgatgataacttctaccgatggc
ctccttgagaccctgtcgagtgtcctggaactctcaacagccgagaaagtcggtattggt
cttgcattgtctgattctcagaattcagtcatgaagcagaaagggcaacaatttgcaatt
gctcaaattgaggagttgtgcttgaatcctatccaatcggtatcaaatgaccaaattcat
gaaattgttgtcttccttcaacagactgatggcttgtcaaagcatatggatacttttagc
agcattacttctctgctagaagtcgggcagagtcctttttttgctcctatccccaaaaag
cagcgtgatattcagtcaacaaatccttctagacatttggatctgtactttaatagcaca
agtgctgactttgagtcacttctttctgaaattggtaaagaaataagtatggcagacact
gtaaccgagttgggttatggatgtactgttgacattgcacactgtatggaaatgctttct
gcttttgagccccttgataatgtggcaatatctaagttgcttggggcagttattggcaat
cacaacagtcttggagaggcccagaatagcacacatgcaacctttgtatctgctattcga
aatagccctacgagcaactcaccccaattaactacatggaacacggatgttcttgtggat
tccatcaacgcagttgccccgagtactaactgggtccaagtaatggaaaatcttgaccat
gggggtttcagtattcctgatgaagcaggtttctatttgctgatgtctatatatgctcgt
gcctgcaaggaccgattcccgcttcatgctgtttgtgggtcaatgtggacaaatacagat
ggccagatatcattcttaaagcatgccgtttctgctcctgctactatgtttacatttgca
cactcttcgaggctgttggcacttccggagtttgcaagtcttagtccaggtaatagtgct
tggttctgccttgaccttctagaggttttatgccagcttgctgaagtcggacacactaag
ccggtgcgagaaatgctcgagtaccctttggaacactgccctgagctcttacttgttggc
cttggacacatcaacactgcgtataatctcctgcaattcgaagtactgtcctgtgtgttt
cctgcaatactgaaggacgctgcaaagagcaatgtggtgaattctctctggcatattaac
acttgcctcacccttcgaggttttgttgatgctcattctgatccgagctgccttctgaga
attgttgatgtgtgtcaagacatgaagatcctatctgctgtccttggttctactccattt
gcattcagcattaagttggctgctgctgcttcttggaaagatcacaaccatcttgagaaa
tggctgactgaaaagttaattatatacaaggatagttttctcaaggaatgtgttaatttc
ttgaaagaaactatgagcgccgcatcttatgtggtagagggtaccatggagcaacctcaa
gttagtgttatcaataaatatttggaggcttgccatccttttatgaaggttctccagtcc
cacttagggctgctcttatccaatcatctttcggatgaactaagggaattgtatacgttg
tatgaatcaaggaatcatggttctgtagtaagggatacccctacctcggagggaggttca
gatgatgttgaagtagaagctaatgcatattttcagcagatgttttctggacagataagc
attgattctatgatacaaatgctggctcgcttcaaagaatctcctgagaagagggagcaa
ttgattttcaactgtatgatcacaaatctgtttgaggaatacaagtttcttacgaagtat
cctgataagcagctaaaactagcggctgtgctgtttggctcccttattaaacatcaactt
gtggctcacctcggactagggattgctctacgtgctgttcttgatgccttgcgcaagtct
cttgattcaaagatgtttctgtttggtacgatagcactggaacagttcatggatcgtgta
gtagagtggccacagtactgcaatcacatattgcagatttcacatcttcgtgaaaatcat
gctgacatggtctatgcaattgagcgagcccttgccagtatttcatcaggtcaaaacgag
cccaatgttggcaacttgctttctgcagagcagcatgtttctggctcgtcatcaatggaa
accatggaggtttctgaaccatcatggcagttcatggggacatccccaactcagctagga
agaacactttcttctttcccgttgcagcaaaggcaaccagaaccaggtgttcttggggac
aggtctatggtctccatgggcacctctcagaataatagcactttacctagtcaacctcca
gttcctttgacgcctgctgattcgactattgatttaaaggcaactgcactagctcactct
acaaacatggcaactactggttttctgcgtcctcgaagtactcccacaggcttgcctcgg
caacattcctatgtgacgggatttggagctgctttaaatatagagacacttgtagcagca
gcggaacaaagagatagacccatcgagactcctccatctgaagttcaggacaagatcttg
tttatgattaacaatatatccacctctaatttggaagcaaaggcaaacgaatttaatcaa
gtgcttcaggaacagtattatccttggtttgcacaatacatggtcatgaaaagggcaagc
atcgaaccaaattttcatgagttgtatctgaagttctttgccaaacttaactcaagatcc
ttgagtaaggagatgctcaaagctacgtacgagaactgcaaggttctgttaagatcagat
cttatcaaatctagttctgaggaacgttccttactaaagaatttgggcagttggttggga
aaattcaccattggaaggaatcagacactaagagctaaggagattgacccaaaatctctt
attgtggaggcatatgagaaaggactgatgattgctgtaattccattcacttcaaagatt
ctcgaaccttgccagtcaagtatagtatatcgtcctcctaatccctggacaatgggaatt
cttagtctactagctgagatctataacctaccaaacctcaagatgaatctcaaatttgac
attgaggtcctgtttaagaacctcagcgtggatatgaaagatgtaaaaccgacttccctt
cttagagatcgagaacgtgaagttgagggaaacccagatttttcaaacaaagatgttgca
tctcaaatcccagtggctgcagaagtatcttcgggcataatccctccaatgaaccacgcg
gaactgcagcctcaggtcaatagcacttcccgtgccatgagcctccctagtatattgaat
cagtatactgctcctgttcgtcttcctcctaacagcatggcggaagatgacaaaattgct
tcattaatgcctgagcaagtccccttgcacacctttacccagacaccattggcatcactg
tcaccatctcccctctctcttagtcagcttttgtcattgattccacatgaggaaatacac
ttcaaaataaatacaaaacttgggtctcttggctcacaattgcagttcagcaaaatcatc
ggtgtggcgttggataaggctatcaaagagataattctccctgtaattgaaaggagtgtt
acaacagcaagcaaaactacaaaagaacttgtcctcaaggattatgcaacgaaatcggat
ataaattctgcaaatcgttctggtcgtttgatggtcgggacattagctggaagtctagct
catgttacttgcaaggagcctcttcgtgttgcactatcgtctcatcttcgaagccttatt
caaaaccttactagtaacagtgaaactgttgaccaagtaaccgatattctaatcaatgac
aatttggatcttggctgcgcaattatcgaatctgtagccactcgccaggctgttgatttg
attgatggcgaaataactcaatcattttcacaacaaaggagaaaaagagacgcagctggt
cctgcatattatgattcttttatttatgctcaagttccatttgcccctgtacctgaagta
cttcgtactaagccggagtctgctgcccaacaacgagtgtatgaggagtttgttcatgta
tggcagaggcgcagccaaagtattggtgctgccggttctagttcagctagtacagctgct
gtgtcgagcaattttggtgtacctcgagcttacagcccaaattcagcaccagcaacctcc
agcactatcttgacatctcaaacagctcatcttacactaactcagcctacagagctggtt
tctgaggaattaattcctggtgccgcacaactttctagtgattctccttctcaaattggg
accagtgattcttctggctggcttggcggaaccatcgcctctgcatccacatctccccct
ccagtgacatctaatgaccttcctgtgggaggaacaacggtcacagctgacgatttaagt
gctatgatgttccccccatctacaatttctgttgacaattttgggttggttttgcctgat
cctttgaacactgatgatgctttgaagagatacagactaatttcacaaaagctggaagcc
ttgattgccaaggatggtaaagattcggaaatccagtctgttattgcagaagttcctgat
cttttagtcaaatgtgttagcccggatgaggctgcattagctgttgcacaaaaggttttc
aaaagtttatatgacaacacatcaaatagtggccgtgtcatgtggtttgtagcaacttta
gttgcgatacgagatgtctgcaagcttgttgttaaagagctaacaaattgggtgatattt
tctgacgacgagaagaagtttaacattgaaattattattgcccttattcgttctgatttg
ctgagtcttggggaatacaatgattatttggcaaggctaattgatggtggaagaaacagg
atcgcaacagaatttgccatgtcacttgtccagaaattgatttctcagaactctgtttgc
atctcagaacttttcagtgttgttgatgcactgtcaaagatttcaaggaggccaggttca
cctgagtccttgcaacaattgattgagaaatcaagacataaggccaacactgctcctact
tttgattttgggatggatgaaaaagtcagacaaccgaaggataaaaaggtcttgtctagc
caaacaaataaagaggaaaacagtgttaatgatatcactctagctgagtctgttactttc
catgaccaggttgcacacctatatactgagtggtgtcaagtatgtgatcatccaagtgct
tgtgatgcggcatatagtcattttgttatgcagttggaacatatgggtctgctgaaggga
gatgaatccactgaacgcttcatccgaattctcacggaacttgctgtgacacgctctcta
gtctctgagcaaattgttgctcctggtggattgtctcagcagtcatcacaacaaccacat
atatcttatttccccattgattcatattcgaagcttgtgtctatggtactcaagcactct
tcagtggagatgggaccaaatgaaggcagtcttcttcccaagattctgtcagtgacagtt
aagatcattcagaaagatgctgaagagaagaaatctttattcaaccctcgaccattcttc
cgtctgtttataaattggctgaatgaccttagtagttctgacccccatcatgatggcgct
aattttcaggttttgactgcatttgcaaatgcattccatttactgcagcccttgaggatt
cctagcttgagctttgcttggcttgagttggtgagtcacagaacattcatgccaagactg
ctgatgtgcaattcgcaaaaggggtggcccttttttcaacggctgcttgttgatatgttc
aaattcatggagccatatttgagaaatgctgaccttttagaaccagtgcgccttttgtac
aaaggaactatgagggtgctgcttgtactactacatgattttcctgaatttctgtgtgac
tatcacttcagtttctgtgatgtgatccctaccagctgcattcaaatgcgcaatgtcatt
cttagtgcttatccacacagcatgagacttccagatccgtcgactcctaatttgaagatt
gatctgctagctgaaatttcaatagctccacgaatcatgtcagatattggcggtgctctg
aagttgaagcatatgaagactgatgttgatgagtatcttaagagaccagaaggctcttcc
tttctgagtgacattaagcaaaagctgctgctgcctcaaaatgaagctattgttgctggg
acatgctacaatgtgcctctgattaattcgcttgttctatatgtgggcatccaagctgtg
caactgcaagagaacaaggttaatgcattggcaacaaccccaatggatatttttcagatt
gcaactgcaactgaaatattcagaaatcttgcaacaaacttggatacagagggacggtac
cttcttttgaactctattgctaaccaattgcgataccccaataaccacacacactacttc
tccttcatcgttctgtatctatttgctgaagctacccaggacaaaatccaggagcagata
actaggatccttttggaacgactgatagtgaaacgtcctcatccttggggattactcatt
actttcaccgagctggtaaagaaccctcgttacaacttctggaaccgatccttcacacac
tcggcgcctgacattcagaagctgtttgaggctgctgcgaagtcctgtgctgcaaaagct
gctgtcgagggtgtccctgatgttaaccggtcaacgatggcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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