KEGG   Brachypodium distachyon (stiff brome): 100844955
Entry
100844955         CDS       T01717                                 
Name
(RefSeq) putative DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    100844955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bdi03400]
    100844955
Enzymes [BR:bdi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100844955
DNA repair and recombination proteins [BR:bdi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     100844955
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT DNA_ligase_IV RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 100844955
NCBI-ProteinID: XP_010240377
UniProt: A0A0Q3KWA2
Position
5:complement(23864508..23873051)
AA seq 1239 aa
MAATVRFGLLVAMFQAMSRDRTSAKKRGRLRAFLDRAYGAPGRDDYFSALRLVLPSLDRE
RGSYGLKEAALAAALVDALGIAKDSPDAVRLTNWRRGGGGSGRNAGNFSLVAAEVLQRRQ
GMTSGGLTIKEVNDALDHLSATENRSEKALVLSSLIKKTNALEMKWLLMIILKDLKLGIS
EKSIFHEFHPDAEDLFNVTCDLKLVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVSNASS
AWKKLHGKPVVAECKFDGDRIQIHKNGEEIHFFSRTFLDHSEYEPGMSRYIKENILVDRC
ILDGEMLVWDTALNRFAEFGSNQEIAKAARDGLETDRQLCYVAFDILYAGDTSVIHQSLT
ERHEILRKVVKPLKGHLEILVPTGGLNVHRPSDEPCWSIFAHNIEDAEKFFKETVDNREE
GIVLKDLDSKWEPGDRSGKWLKLKPDYIHAGTDLDVIIVGGYYGSGRRGGEVAQFLVGLA
VPSNDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPPRFYEVTNNSKER
PDVWIESPDKSVIISVTSDIRTIKSEVFAAPYCLRFPRIQQVRYDKPWHECLDVQSFVEI
VHSSNGTMQKAEDDKSLKNDNVKHTRTNKRGEKKNVSIIPSHLMKTDISGLKGETLIFAN
TMFYFVNTPPSYNLEYFHKVVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAAIRHGRIIH
YSWILECCKQKCLLRLQPKYILFLADFARHKFLEEIDSYADFYYWDIDVADLKQIFSNMN
TITVDQSIVQRYKKKHCADERFCFFQGCCVYLHHAPLVNEDYNVISDLALKRVKHDLTMH
GGQVCSSLAPATHLVIVSVLQAYNFDISYKSFSPAERRYLHDKRLHVVSNKWLEDSVDKQ
MKLPEALYNLKPDTLEEIHIERSEVDVQPSNDKHEEDEEVEISHVTNARKRGRPSSSSSR
TVRAAPRPVRRTRARRGNQRAKIGDVESEESGPGETGQDDQKLKADYTSKMEEDNSDKDQ
RPPQAAPRPARRTSARRGNQLAKIDYLESEENDHGETGKADYTTKMEEDNLDKDQGPPPG
AQFITLEEQEPNGVKLSTGEDTTSSPRYKSKETSGRTNVAETTSTTGEKIEQMFDPVHAM
LLNMMPSLRQERRQDAITDPPATKLENNPPARAGSSTSSYRVPVPETVGSASNSGISASQ
TGSSTYSAGVPASDPNAAAPPKKKKVSYKDMANDLLKDW
NT seq 3720 nt   +upstreamnt  +downstreamnt
atggcggcgacggtgcgcttcgggctcctggtggcgatgttccaggccatgtcgcgggac
cgcacgtcggcgaagaagcggggccgcctccgcgcgttcctcgaccgcgcctacggggcc
ccgggccgggacgactacttcagcgcgctccgcctcgtcctcccgtcgctcgaccgcgag
cgcggctcctacgggctcaaggaggcggccctggccgcggcactcgtcgacgcgctcggc
atcgccaaggactcccccgacgccgtccgcctcaccaactggcgccgcggcggcggcggc
agcggccgcaacgccggcaacttctccctcgtcgccgccgaggtactgcagcggaggcaa
ggaatgacttctggcggcttgacgataaaggaggttaacgatgcactcgatcatctatct
gcaactgagaacaggtctgagaaggctttggttctttcaagtctgatcaagaaaaccaat
gcccttgaaatgaagtggcttctaatgattattcttaaggatttaaaactggggatcagt
gagaagagcatattccatgagtttcatcctgatgctgaagacttgttcaatgtcacttgt
gacttaaaattagtctgtgaaaagctcaatgatcgaagtcaaaggcataaacgacaggat
atagaagttggaaaggctgtcagacctcaactagctatgagagtcagtaacgcttcatcc
gcttggaagaagcttcatggcaaaccagtggtcgccgagtgcaaattcgatggggaccgt
atccaaattcacaagaatggggaagagatccatttcttctcacggacctttcttgatcac
tccgaatatgaacctgggatgtccagatatatcaaggaaaatatcctggttgacaggtgt
attttggatggagagatgcttgtttgggacacggcgcttaatcggtttgcagaatttggt
tcaaaccaggaaatagcgaaggccgcaagggatggactggaaactgatcgacagctgtgc
tatgttgcttttgacattctttatgctggagacacaagtgttattcaccaaagtttgaca
gagcggcatgaaattctgcggaaggttgtcaaacctttaaagggtcatcttgagattttg
gttccaacaggtggtctgaatgtccatcgtccttcagatgaaccatgctggtccattttt
gcacacaatattgaagacgcggagaaattcttcaaggaaactgttgataacagagaagag
ggaattgtactgaaggaccttgattccaaatgggagcctggtgatcgaagtggaaagtgg
cttaaattaaagcctgattatatacatgctggcactgatctggatgttattattgtaggt
ggatattatggatcaggacgtcgaggaggagaggttgcacagtttttagttggtctggca
gtgccttcaaatgataatagttatcccaaaagatttctttctttttgtcgagtcggtact
ggtctctctgacgaagaacttgacgctcttgtcacgaaactgaagccacacttcaggaaa
aatgagtaccccaagaaaccacccagattttatgaagtaacgaacaattcgaaggagcgg
ccagatgtttggatagaaagccctgataagtcagtcataatatctgtaacgagtgatatt
cgaacaatcaaatctgaggtatttgccgccccgtactgcttgaggttcccccgcattcag
caagtgagatatgataagccatggcatgagtgcctcgatgtgcagtcatttgtggagatt
gtgcattcaagtaatggcacaatgcagaaggcggaagatgataagagtctgaagaatgat
aatgtaaagcacacaagaacaaacaaaaggggtgagaagaagaatgtatcgatcatccct
tcacatcttatgaagactgacatatcaggcctaaagggagagaccctgatatttgcaaac
acaatgttctatttcgtcaacacccctccatcatataacctcgaatatttccataaagta
gttgtggagaatgggggttctttctcaatgaatctcaatgactcagttactcactgcatt
gcagccgagaaaaagggtatcaaatatcaggcagccatacgtcacgggaggatcattcac
tattcctggatcttggaatgttgcaagcaaaaatgtcttcttcgtttgcaacctaagtat
attctctttcttgcagattttgctaggcacaaatttcttgaagagatcgactcgtatgct
gacttttactactgggatatcgatgttgctgacctcaagcagattttcagcaacatgaac
acaattactgtcgatcagagcattgtacaacggtacaaaaagaagcattgtgcagatgaa
agattctgcttcttccagggttgctgcgtttacttacatcatgcacctttagtgaatgag
gactacaatgtaatatctgatcttgcactgaagagggtgaagcatgaccttaccatgcat
ggtggtcaggtctgcagcagccttgcccctgctactcatttggttatagtttcagttctg
caggcctacaattttgacatatcgtacaagagcttttctcctgctgagaggcgttatcta
catgacaaaagattgcatgttgtcagtaataagtggttagaagattcagtggataaacaa
atgaagctgcctgaagccctctacaaccttaaaccggatacattagaagaaatacatatt
gaaaggagcgaagtagatgtccagccctctaatgacaaacacgaggaagatgaggaggtc
gaaatatctcatgttacaaatgcaaggaaaaggggcaggccatccagtagtagttcacga
actgtaagggctgctcctaggccagtccgaagaacaagggctagaagaggaaaccagcgt
gcaaaaataggtgatgttgagtctgaagaaagtggccctggtgaaacaggtcaagatgat
caaaaattgaaagcagattacacctctaagatggaagaagataacagtgacaaagatcaa
agaccacctcaagctgctcctagaccagctcggagaacaagtgctagaagaggaaatcag
cttgcaaaaatagactaccttgaatctgaagaaaacgaccatggtgaaacaggcaaagca
gattacaccaccaagatggaagaagataacctggacaaagaccagggaccacctccaggt
gcccagtttatcacattggaggagcaagagcccaacggtgtcaaattgagtaccggggag
gatacaacaagcagtcctaggtacaaaagcaaagaaacttctggaagaacaaatgttgct
gaaacaaccagcacaacgggagaaaagatagaacaaatgtttgatccagtgcacgcgatg
cttctcaacatgatgccgtccctgcgccaggaaaggagacaagacgcaatcacggatccc
ccagcaaccaaacttgagaacaatcctccagcacgggcaggaagttccacatcgagttac
agggttccggtgccagagacggtaggctctgcgtctaattccgggatctcggcatcgcag
acagggagttcaacatacagtgcgggggttccagcttcagatccaaacgctgctgctcct
ccaaagaagaaaaaagtgagctacaaagatatggccaacgatctcctgaaagattggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (31)   

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