KEGG   Betaproteobacteria bacterium UKL13-2: AEM42_13715
Entry
AEM42_13715       CDS       T04342                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
beb  Betaproteobacteria bacterium UKL13-2
Pathway
beb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:beb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AEM42_13715 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:beb03021]
    AEM42_13715 (rho)
   03019 Messenger RNA biogenesis [BR:beb03019]
    AEM42_13715 (rho)
Transcription machinery [BR:beb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AEM42_13715 (rho)
Messenger RNA biogenesis [BR:beb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AEM42_13715 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 AAA_25 NACHT AAA_22
Other DBs
NCBI-ProteinID: AMS33164
UniProt: A0A142LLR8
Position
3046340..3047599
AA seq 419 aa
MQLSEMKLKHVSELVEMAATAELEGANRLRKQELIFALLKHQAKKGEAIFGDGTLEVLQD
GFGFLRSPDISYLAGPDDIYVSPSQIRRFNLHTGDTIEGEIRTPKEGERYFALVKVDKVN
GEPPEAGKNKILFENLTALFPNKPFTLERDIKSDENITGRVIDIIAPIGKGQRGLLVASP
KSGKTVMLQHIAQAITSNHPEVILIVLLIDERPEEVTEMQRTVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEVHLDRRAAEKRVYPALNV
NRSGTRKEELLIKPEILQRVWVLRKMMFAMDELEATEFLIDKLKATKNNAEFFDSMKKS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgcaattatccgaaatgaaactcaaacacgtctccgagctcgtggagatggccgcaacc
gccgaactcgaaggtgctaatcggctgcgcaaacaggaattgatttttgcgctgctcaaa
caccaggcaaaaaagggcgaggcgatttttggcgatggcacccttgaggttctgcaagac
ggatttggtttcctgcgttccccggatatttcctacttggccggaccagacgacatttac
gtcagcccgtcacaaatccgccgctttaacctgcacacgggcgacaccatcgaaggcgaa
atccgcacacccaaagaaggcgaacgctattttgcgttggtcaaagtggacaaggtcaat
ggcgagccgccggaagcgggcaaaaacaagattctgtttgaaaacctgaccgcactgttt
ccaaacaagcccttcacactcgaacgcgacatcaaatccgacgaaaacatcactggtcgc
gtgatcgatatcatcgcgccaatcggcaaaggccagcgtggtctgctggttgcctcgcct
aagtccggcaagacggtcatgttgcagcacatcgcccaggcgatcaccagtaaccatcct
gaagtgatcttgatcgtgctactaatcgacgaacgtccggaagaagtcactgagatgcag
cgtaccgtcaaaggcgaggtggtctcgtcaacctttgatgaacccgccacccgccacgtt
caagtcgcagagatggtgattgagaaagcgaaacgcttggtcgaacataaaaaagatgtt
gtcattctgctcgactcaattacccgccttgctcgtgcgtacaacaccgtggttccggcg
tccggcaaagtcttaactggcggtgtagacgccaacgccctccaacggccaaaacgcttc
tttggcgcggcgcgcaacatcgaagaaggcggctcgctgacaatcattgcaacggcgctg
atcgacaccggctcccgtatggatgacgtcatttacgaagaatttaagggcaccggcaat
atggaggtccacctcgaccgccgcgctgctgaaaagcgtgtctatcctgcgctaaacgtc
aaccgctcgggtacgcgtaaggaagaactgctcatcaagccggaaatccttcagcgcgtt
tgggtgctgcgcaaaatgatgtttgcgatggacgagttggaagccaccgagtttttgatc
gacaaactcaaagcgaccaagaacaacgcggaattcttcgattcgatgaagaaatcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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