KEGG   Bacteroides fragilis YCH46: BF0169
Entry
BF0169            CDS       T00202                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
bfr  Bacteroides fragilis YCH46
Pathway
bfr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bfr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BF0169
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bfr03019]
    BF0169
   03009 Ribosome biogenesis [BR:bfr03009]
    BF0169
Enzymes [BR:bfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BF0169
Messenger RNA biogenesis [BR:bfr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BF0169
Ribosome biogenesis [BR:bfr03009]
 Prokaryotic type
  rRNA helicases
   BF0169
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII RecG_N CMS1 Ig_Tie2_1
Other DBs
NCBI-ProteinID: BAD46918
UniProt: Q650A8
Position
complement(181580..183490)
AA seq 636 aa
MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LIQKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQILVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
IGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEDINDFMPEIYRKLEWLSKEDLIKR
MVSHEFNRFVDYYRNREEIEVPTDSRSERAGKSREGKSSRQAEPGYTRLFINLGKMDNFF
PHELITLLNNNTRGRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNWNGRKVTVEVAG
EEASTEHKGRGKRNEGNDQGGRGRSSAPSADRKERGKGSKDSKQADSRKGKKPSREERGY
SAARGPKGKDEWKQFFKDAEPDFSEEGWARRKPKKS
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgaagacatttgaagagcttggcgtttctccggagatacgtaaagctattgaagagatg
ggatacgagaatcccatgccggtacaggaggaagtgattccatacctattaggagagaat
aatgatgtagtagctcttgcacagacagggacgggtaagaccgcagcgtttggcttgccc
ctcatccagaaaattaacgtaaaaaacagaatacctcaatcactcgttctttgccccaca
cgcgagctttgcctccagatagcaggcgacctgaacgactattccaaatacatcgacggg
ctgaaagtattgcccgtatacggcggttcatccatcgacagccagatacgcagcctgaaa
cggggtgtgcatatcattgttgccacaccggggcgactcctcgacttgatggaacgcaaa
acggtatctcttgccactgtcacaaacgtagtgatggacgaagcggacgaaatgctcaat
atgggctttacggacagtatcaatgccatcctggcagatgttccacaagaacgtaacaca
ctgcttttctcggccactatgagcccggaaatagcccgtatttcgaagaactaccttcac
aatgcaaaagagatcaccatcggacgcaagaacgaaagtacgagcaacgtgaagcatgtg
gtctataccgtacatgcaaaagataaatacgccgctctgaaacgcatcgtagactattat
ccgcagatttacggtatcatcttctgccgtacccgcaaagagacacaggagattgccgat
aaactgatgcaggaaggttataacgctgactcgttgcacggagaactctcacaggcacag
cgtgacacggtgatgcagaagttccgcatccgcaacatccagatcctggtagccaccgat
gtagccgcgcgcggactggacgtagacgacctgacacacgtcatcaactacggattgccg
gacgatacggaaagttatacgcaccgtagcggacgtacaggacgtgccggaaagacaggt
acatccatcgccatcatcaatttgcgtgaaaaaggaaagatgcgcgaaatagaacgcatc
atcggtaagaaattcattgccggtgaaatgcctaccggtaagcagatctgcgagaaacag
cttctcaaagtgatagacgatcttgaaaaagtaaaggtaaacgaggaggatatcaatgat
ttcatgcctgagatttaccgtaaactggagtggctgagtaaagaagacctcatcaagcgc
atggtatcgcatgagttcaaccggtttgtcgactattatcgcaaccgcgaagaaatagag
gtgccgactgatagccgcagcgaacgcgccgggaaaagccgtgaaggaaaaagcagccgc
caggcagaaccgggttacacccgccttttcatcaatctgggtaagatggataacttcttc
cctcacgaactgatcaccttgctcaacaataacacacgaggaagagtagaattgggacgc
atcgacctgatgaaaaatttctcgttcttcgaagtggaagagaaacaagcacaaaacgtc
gtaaaggcgctgaaccggacaaactggaacggacgtaaagtcacagtagaggtagccgga
gaagaggcatctacagagcacaaaggacgtggaaagcggaatgaaggtaacgatcagggt
ggcagaggaagaagcagcgctccatctgccgaccgcaaagagagaggcaaaggcagcaaa
gacagcaaacaagccgacagccggaaaggcaaaaagccaagccgtgaggaacggggatat
tccgcagcccgcggccccaaaggcaaagatgaatggaaacagttctttaaagatgccgaa
cccgacttcagcgaagaaggatgggcaagaagaaagcctaaaaagagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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