KEGG   Bacteroides fragilis YCH46: BF1142
Entry
BF1142            CDS       T00202                                 
Name
(GenBank) type III restriction-modification system restriction subunit
  KO
K01156  type III restriction enzyme [EC:3.1.21.5]
Organism
bfr  Bacteroides fragilis YCH46
Brite
KEGG Orthology (KO) [BR:bfr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:bfr02048]
    BF1142
Enzymes [BR:bfr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.5  type III site-specific deoxyribonuclease
     BF1142
Prokaryotic defense system [BR:bfr02048]
 Restriction and modification system (R-M system)
  Type III R-M system
   BF1142
SSDB
Motif
Pfam: RE_endonuc ResIII DEAD PhoH AAA_5 Ribosomal_L38e
Other DBs
NCBI-ProteinID: BAD47892
UniProt: Q64X84
Position
complement(1370479..1373511)
AA seq 1010 aa
MKLKFKHQKFQEDAAKAVCDVFGGQPYKMFDYQVETRKKDGQTSFEKFTGFRNHPIVPQL
TDEIVLKHIRDIQRAQQIKPSEALEGKYNLTIEMETGVGKTYTYIKTIFELNKRYGWCKF
IIVVPSVAIREGVHKSLEIMKEHFASDYSTPLSYFIYDSKQLGELNAFVTDSKIHVMIIN
SQKFNATNKDARRIYMKLDDFGGNCPIDVIAQMNPILIIDEPQSVEGAKTKEGLKRFNPL
FTLRYSATHRELYNLVYRLDAMEAYNLQLVKKIAVKGISISGTTATEGFVYLEGLNLYPD
KNPTANIGFEVKRTKAVNQVVRALKINDDLYAKSNHLEEYRNDYVITDINGVEDSVTFRN
GIKLYAGDVAGSVNETQLRRIQIRETILSHIEKEQELFEKDIKVLSLFFIDEVAKYRRYN
PDGKGEYAEIFEQEYTDIIKHLDLSLFNQPEYIDYLKSTVASKAHEGYFSKDKKGKLIDS
KTERGTKESADEDAYDLIMKNKERLLDRKEPIRFIFSHSALREGWDNPNVFQICTLKQSS
AEVRKRQEVGRGLRLCVNGQGDRMDANALGVEVHRVNLLTVIASESYESFAKGLQTEMAE
AIADRPQKVTIQLFKDQSLRLANGETIIATEDIAQSIYDSLLENKYIKKGELTDKFYEDR
KQGEVIFDDELTDYKASIMTILASIYNPREMQPNDARKSKINLRLSKDKLENSKLQELLK
LLCSKSTYTVKFDEKELVERAIESLNEKLRVSQLYLSVITGQMEKIKSKAALISGEAFKV
DANQAHYEKIDAMANDQVKYDLLGKLTDATNLTRQAVAQILSRIKPNVFGQFKNNPEDFI
IKASELINEEKACLIVKHIEYTPIDQYYDVSVFTRATIQGRLGVNTIKADKHLYDHVRFD
SQNEKTFMERLEENDEIEAYVKLPGNFYIPTPMGKYHPDWAIVFKQKLSKYPYFIAETKA
SDSSLQDRRIEEAKIECAKKHFAKTNGGKLKYNKVSSFEELLKIVTQESV
NT seq 3033 nt   +upstreamnt  +downstreamnt
atgaaattaaaattcaaacatcagaagtttcaggaagacgcagcaaaagcggtatgtgat
gtctttggcgggcagccatacaagatgttcgactatcaagtagagacccggaagaaagac
ggacagaccagctttgaaaagtttacaggattccgtaaccaccctatcgtacctcaactc
acagatgagatcgttctgaaacacatccgggatatccagcgtgcccaacaaatcaaaccg
tcggaagcgctggaagggaaatacaatctcaccatcgaaatggagacgggtgtaggtaaa
acgtatacctacatcaaaaccatctttgaactgaacaaacgctacggttggtgcaagttc
atcattgtcgtacccagtgttgccatccgcgaaggagtccacaaaagcctggagattatg
aaggaacactttgcctcggattacagcacccctctgtcttatttcatctacgactccaaa
cagttgggtgaattgaacgcatttgtcacagacagcaaaatccatgtaatgatcatcaat
tcacagaagttcaatgcaacgaacaaagatgcccgccgcatctacatgaagctggatgat
tttggcggaaactgtcccatcgatgtgattgcgcagatgaatccgatactgattatcgac
gaacctcagtcagtagaaggagccaaaacaaaagagggattgaaacgattcaatcccctg
ttcacactgcgttattcggctacacaccgcgaactctataatctggtctatcgcctggac
gcaatggaagcttacaacctgcaactggttaagaaaatcgctgtcaagggtatctctatc
agtgggacaacagctactgaaggattcgtttatctggaaggtttgaacctgtatccggac
aaaaacccgactgccaatatcggattcgaagtaaaaagaaccaaagcagtgaatcaggta
gtacgagctctgaagataaatgatgacttgtatgctaaatcaaaccatctggaagaatac
cggaacgactatgtaattacagatatcaacggcgttgaagactccgtcaccttccggaac
ggcatcaaactttatgcaggtgacgtagcgggtagcgtcaacgaaacccaactacgacgt
atccagatacgggaaaccatcttgtcacacatagaaaaagaacaggaactgtttgagaaa
gacatcaaagttctctcccttttcttcatcgatgaagtagccaaataccgccggtataac
ccggacggaaagggagaatatgccgagattttcgaacaggaatataccgatatcataaag
cacctggatctttcgttattcaatcagccggaatatatcgattacctgaaatcgactgtg
gcatcgaaagctcacgaaggatacttctccaaagataaaaaaggaaaactgattgacagt
aaaaccgagcggggaaccaaagaatcggcagatgaagatgcttacgatttgattatgaag
aataaagaacgtctgcttgaccggaaagagccgatccgctttattttctcacattccgct
ctgcgggaaggatgggacaacccgaatgtctttcagatctgtaccctgaaacaaagttcg
gcagaggtacgcaagcgtcaggaagtgggacgagggctgcgcctctgtgtaaacggacag
ggagatcgcatggacgccaacgctttaggcgtagaagtgcatcgtgtcaacctactgacc
gtgatagccagcgaatcgtacgaatcgtttgccaaaggcttacagacagaaatggcggaa
gccatagccgaccgtccacagaaagtaaccatccaattattcaaggaccagtcgctccga
ttagctaacggtgaaaccatcatagccaccgaagatatagcacaaagtatctacgactct
ttacttgaaaacaagtacatcaagaaaggagaactgacagacaaattctatgaagaccgt
aaacagggagaagtgattttcgacgacgagctcaccgattataaggcgtctatcatgacc
atcctggcctctatctataatccaagggagatgcagccgaacgatgcaaggaaaagtaag
ataaatcttcggttgtcaaaagataaacttgaaaacagcaaacttcaggaactgttaaag
ctgctatgcagtaagtcaacctacaccgtaaagtttgacgaaaaagaattggtagagaga
gcgatcgaaagtttaaatgaaaagttaagagtatcccagctctatctttctgtcattacg
ggccaaatggaaaaaatcaagtccaaagcagctttaatttcgggagaggcatttaaggta
gatgccaatcaggcgcactatgaaaagatagatgccatggcaaacgatcaagtaaaatat
gacttgctcggtaaactcacagacgccaccaatctgacccgacaggcagttgctcagatt
ctctcccggataaaaccgaatgtattcggccaattcaaaaacaatcccgaggattttatt
atcaaggcttcggaactgattaatgaagaaaaagcatgtctgatagtaaaacatatcgaa
tataccccaatcgaccagtactatgatgtatcggtctttacccgggcaactattcagggg
cgtttgggagtaaacacaataaaagcagataaacatctgtacgatcatgtgagattcgac
tcccaaaatgaaaaaacattcatggaaagactggaagaaaatgacgaaatagaagcttat
gtaaaactacccggcaatttctatatccctactccgatgggaaaataccatccggactgg
gccatcgtcttcaaacaaaagttatcgaagtatccttattttattgccgaaaccaaagcc
agcgattcctccctacaagatcggagaatagaagaggcaaagatcgaatgtgccaaaaaa
cattttgcgaagacaaacggtgggaagcttaaatataataaagtaagctccttcgaagaa
ctcttgaaaatcgtcacacaagaatccgtttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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