KEGG   Bacteroides fragilis NCTC 9343: BF9343_0027
Entry
BF9343_0027       CDS       T00239                                 
Name
(GenBank) putative SAM/TRAM family methylase protein
  KO
K06168  tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
Organism
bfs  Bacteroides fragilis NCTC 9343
Brite
KEGG Orthology (KO) [BR:bfs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:bfs03016]
    BF9343_0027
Enzymes [BR:bfs01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.3  tRNA-2-methylthio-N6-dimethylallyladenosine synthase
     BF9343_0027
Transfer RNA biogenesis [BR:bfs03016]
 Prokaryotic type
  tRNA modification factors
   Methylthiotransferases
    BF9343_0027
SSDB
Motif
Pfam: UPF0004 Radical_SAM TRAM TRAM_2
Other DBs
NCBI-ProteinID: CAH05806
UniProt: Q5LJ70
Position
32971..34344
AA seq 457 aa
MNELTGADFKSATADDNKKLFIETYGCQMNVADSEVIASVMQMAGYSVAETLEEADAVFM
NTCSIRDNAEQKILNRLEFFHSMKKKKKHLIVGVLGCMAERVKDDLIEHHHVDLVVGPDA
YLTLPELIASVEAGEKAMNVELSTTETYRDVIPSRICGNHISGFVSIMRGCNNFCTYCIV
PYTRGRERSRDVESILNEVADLVSKGYKEITLLGQNVNSYRFEKEGGEVVTFPMLLRLVA
EAAPGIRVRFTTSHPKDMSDETLEVIAQVPNVCKHIHLPVQSGSSRILKLMNRKYTREWY
LDRVAAIKRIVPDCGLTTDIFSGFHSETEEDHRESLSLMEACGYDAAFMFKYSERPGTYA
SKHLEDNVPEEIKVRRLNEIIALQNRLSAESNNRCIGKTYEVLVEGVSKRSRDQLFGRTE
QNRVVVFDRGTHRIGDFVNVRITEASSATLKGEEVFS
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgaacgaattgacgggagcggactttaaatccgcaactgctgatgacaacaagaagttg
tttatcgagacttatggctgccaaatgaatgtggcagatagtgaagtaatcgcctctgtg
atgcaaatggcgggttattcggttgccgaaacgctggaagaggctgatgcggtgtttatg
aatacctgctctatccgtgacaatgccgaacagaagattttgaatcgtctggagttcttt
cattcgatgaagaagaaaaagaagcaccttattgtaggtgtattggggtgtatggccgag
cgggtaaaagatgatctgatagaacaccatcatgtggaccttgtagtaggaccggatgct
tatctgactcttcctgagttgattgcttcggtagaggccggtgagaaggcaatgaatgta
gaactttcgactactgaaacctaccgggatgtgattccttcgcgtatctgtggtaaccat
atctccggatttgtatccatcatgcgcggatgcaataacttttgtacctattgtattgtg
ccttatacccgtggacgtgaacgtagccgggatgtggagagtatattgaatgaagtggcc
gatttggtatcaaaaggttacaaagagatcactctgctggggcagaatgtaaactcttat
cgttttgagaaggaggggggggaagtagttactttcccaatgttacttcgtctggtggct
gaggctgcaccgggaatacgtgtccgtttcaccacttcgcatcccaaagatatgagtgat
gaaaccttggaggtgattgcacaggttcctaacgtatgcaaacacattcaccttcccgta
caaagcggaagttcgcgtatcctgaaattgatgaatcgcaaatatacgcgtgaatggtat
ctggaccgggtagcggcgatcaaacgtattgtgcccgattgcggacttactaccgatata
ttttccggcttccattccgaaacggaagaagaccaccgggaatcactttcgttgatggaa
gcttgtggttatgatgcagcatttatgtttaaatattcggagcgtcccggtacttatgct
tccaagcatctggaggacaacgttcccgaagagataaaagtccgtcggctgaatgaaatc
attgctttgcagaatcgtttgtcggccgaatccaataatcgttgcatcggtaaaacgtac
gaagtgttggttgaaggtgtttcgaagcgttcacgcgaccagctgttcggccggaccgaa
cagaatagggtagtggtattcgaccgcggtacccatcggataggtgatttcgtgaatgtg
agaatcacggaggccagttctgccacattgaagggtgaagaagtcttcagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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