KEGG   Bartonella henselae Houston-1: BH06110
Entry
BH06110           CDS       T00180                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bhe  Bartonella henselae Houston-1
Pathway
bhe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BH06110 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bhe03021]
    BH06110 (rpoC)
   03400 DNA repair and recombination proteins [BR:bhe03400]
    BH06110 (rpoC)
Enzymes [BR:bhe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BH06110 (rpoC)
Transcription machinery [BR:bhe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BH06110 (rpoC)
DNA repair and recombination proteins [BR:bhe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BH06110 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: CAF27415
UniProt: Q6G3X4
Position
714049..718257
AA seq 1402 aa
MNHEVMNLFNPQSPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLASMELEKIANDLRAELSETTSELKQKKLIKRLKIVENFLESGNRPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMVFSDIGELHHALE
NKVVTLHTKIKGRVKNIDKDGKEVAKLYDTTPGRLIIGELLPKNPSISFDIVNQEMTKKN
ISKMIDQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMLIPDSKLRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPKTGRQRPMNSIY
MMSHSGARGSANQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVILEGGAMIEEADVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASYEGTVEIRNRN
VVRNSEGHLVVMGRNMAILIKDGSGKERVVHRISYGAHIFVDDGDVVKCGQRIAEWDPYT
RPILTEVEGYVGFEDMIDGLSVTETADESTGITKRLVIDWRANPRGADLKPAIIIHADKK
GEAIAKYKGAEARYMMSVETILSVEPGSHVKAGDVIARLPMESAKTKDITGGLPRVAELF
EARRPKDHAIIAEVSGTIRFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHFQEGDQI
EKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKV
EITESGDSGYIPGDHVDRIELDEINDNLLAEGKRPASGNPILLGITKASLQTPSFISAAS
FQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIAAVRDDLIVDEQR
KSGNNEVAKAMLTNMTTVTTVE
NT seq 4209 nt   +upstreamnt  +downstreamnt
atgaaccacgaggtcatgaatcttttcaatcctcagtcaccagcgcagacatttgactct
attcgtatttcaattgcgagccctgagaagattttgtcttggtcgtatggtgagatcaag
aagcctgaaactattaattataggacttttaagccagagcgtgatggtcttttctgtgca
cgtatatttggtccaattaaagactatgaatgtctatgcggtaaatataaacgcatgaaa
tataaaggcattatctgtgagaaatgtggtgtagaagttactctttcacgtgtacgtcgt
gagcgtatgggccatattgaacttgcagcacctgtcgcacatatctggttccttaaatca
ttaccaggtcgcatttctacacttttagatttgactttgaaagatattgagcgagttctc
tattttgaaaattatattgtcacagagccagggctgacatcccttaagctccatcagctt
ctttctgaagaagaatatatgctggctattgatgagttcggggaagatcagttcacagcc
atgattggtgcagaggctatttacgaacttctagctagtatggagttagaaaaaattgcc
aatgatttgcgtgccgaattgtccgagacaacttcggaattaaaacagaaaaagctcatt
aaacggcttaagattgttgaaaattttcttgaatctggcaatagaccagagtggatgatt
atgaaaacgataccggttattccaccggatttacgtccattggttccacttgacggtggt
cgttttgctacgtccgatttgaatgatctttatcggcgggttataaatcgtaataatcga
ttgaaacgacttattgaattgcgggccccaggaattattgtacgcaatgaaaagcgtatg
gtgcaagaagctgttgatgcattatttgataatggtcgtcgtgggcgtgtaattactgga
gccaataagcgtccactaaaatctctttcagatatgctaaagggtaagcaaggacgtttc
cgtcaaaacttacttggaaagcgtgttgattactcggggcgttctgttattgtcacaggt
cctgaattgaaattacatcaatgtggtcttcctaagaaaatggctctcgaattatttaag
ccatttatttatgcacggcttgatgcaaaggggtattcatcaactgtaaaacaggcaaag
aagcttgttgaaaaagagcatccagaagtttgggatatcttggatgaggttattcgtgaa
catcctgttttgcttaatcgtgcaccaacattgcaccgtttggggattcaagcttttgaa
cctgttttgattgaagggaaagctatacagcttcatccattggtatgtactgcttttaat
gccgattttgatggagatcagatggcggtccacgttccactttctcttgaagcacagctt
gaagcgcgtgttttgatgatgtcgaccaataatattcttcatccagccaatggtgcccca
attattgttccatcacaggatatggttcttggtctttactatctttcgattgtttctgaa
aaagaaccgggcgaggggatggttttttccgatataggcgaacttcatcacgccttggaa
aataaggttgtaactcttcacacgaagatcaaaggccgcgttaaaaatatcgataaggat
ggaaaagaagttgctaagctttatgatacaacacctggtcgtttgatcattggggagctt
ttaccgaaaaatccaagtatctcctttgatattgttaatcaagaaatgactaaaaagaac
atttctaaaatgattgaccaagtttatcgacactgtgggcaaaaagaaacggttattttt
tgtgaccgtattatgcagcttggcttttctcatgcttgtcgtgcgggaatatcatttggt
aaggacgatatgcttattcctgatagcaagttgcgtttggttgcagaaacggaagctttg
gctaaagagtatgaacaacaatataatgatggtctcattacacaaggtgaaaaatataac
aaagttgtagatgcttggggtaaatgtacggatcgtgttgccgacgaaatgatgaaacgt
attcaagctgtcgaatttgatcctaaaacaggtcgtcagcggccaatgaattcgatctat
atgatgtcacattctggtgcgcgtggttctgctaaccagatgaaacagttggctggtatg
cgtgggttgatggcaaaaccctcaggtgaaattattgaaacaccgatcatttcaaacttt
aaggaaggtcttactgttaacgagtactttaactcgactcacggtgcacgtaaaggactt
gctgatactgcattaaaaactgccaactctggttatctcacacggcgtcttgttgatgtt
gcacaggatgctattatttcagcagttgattgtggtactgcaaaggggttgactatgcag
ccaattgttgatgctggacaaatcgttgcgtctcttgggcaaagaattcttggtcgcaca
gcgcttgttgatattctacatccagtttctggagaggttattcttgaaggtggtgcgatg
attgaagaggctgatgttgctaagattgaagaagccggaattcagtctgttcaaatccgc
tctgctttgacatgtgaaacgcgtcttggtgtttgtgccaaatgctatggtcgtgatttg
gcacgcgggacaccggttaatcagggtgaggcagttggtgttattgccgctcagtcgatt
ggagaacctggaactcagcttactatgcgtactttccacttgggaggaacggcgcaagtt
gttgattcatctcatttagaggcctcttatgaaggtacagtagagattcgtaatcgcaat
gtggttcgcaattctgaaggccatttagtggttatgggacgtaatatggctatccttatc
aaggatggatctggaaaagagcgtgttgtacatcgtattagctatggtgcacatattttt
gttgatgatggtgatgttgttaaatgtggccagcgtatcgcagaatgggatccttatacg
cgtccaattctcactgaagttgaaggatatgtaggttttgaggatatgattgatggttta
tcagttactgaaacggctgatgaatctacagggatcacgaaacgcttagtgattgattgg
cgtgctaatccaaggggagctgatctaaaaccagctattatcatccatgcagataagaaa
ggtgaggctattgccaaatataagggagctgaagcccgttacatgatgtcagtggagact
attctttctgttgagcctggttctcatgttaaggcgggtgatgttattgcgcgtttgcca
atggaaagtgccaagacaaaagatattacaggtggtctcccacgtgtggctgagcttttt
gaagcgcggcgtccaaaggatcatgctattattgctgaagtcagtggtacaatacgattt
ggtcgtggttataagaataagcgtcgtattattattgaaccaaatgatgaaactcttgag
ccagtagaatatttgattccaaagggtaagttgtttcacttccaagaaggtgaccaaatt
gaaaaaggagattatatcctcgatggtaatccagctcctcatgatattttggcgattaaa
ggtgttgaagctttggcgtcttatcttgttaatgaaattcaagaggtttaccgtttgcag
ggcgttttaattaatgataagcacattgaagtgattgttcgtcagatgttgcaaaaagtt
gaaattactgaatcgggagattctggttatattccaggtgatcacgttgatcgtattgaa
ttagatgaaatcaatgataatttgcttgcagaaggaaaaagaccagcctctggtaatcct
atactgcttgggattacaaaagcatctcttcaaacaccctcctttatttcagcggcatca
tttcaggaaacaactcgagtacttacggaggcagcggtttctggaaagattgatactttg
caaggtcttaaggagaatgttattgtcggtcgtcttattcctgcgggtacaggcggtacg
attgctcaaatccgtcgtattgctgcagttcgtgatgatttgattgttgatgaacagcgc
aagtctggtaataacgaagtagctaaagctatgttaacaaacatgacaactgttacaact
gttgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (60)   

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