KEGG   Bordetella holmesii ATCC 51541: D560_2044
Entry
D560_2044         CDS       T03052                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
bho  Bordetella holmesii ATCC 51541
Pathway
bho00740  Riboflavin metabolism
bho01100  Metabolic pathways
bho01110  Biosynthesis of secondary metabolites
bho01240  Biosynthesis of cofactors
bho02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:bho00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    D560_2044 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    D560_2044 (ribD)
Enzymes [BR:bho01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     D560_2044 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     D560_2044 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Attacin_N
Other DBs
NCBI-ProteinID: AHV91853
Position
1917566..1918681
AA seq 371 aa
MRRALELARGVIYTTSPNPRVGCVIVRDGQVLGEGATQPAGGPHAEVMALRAAQAGGHDL
AGATVFVTLEPCSHYGRTPPCVDALVAAAPARVVVALGDPNPRVAGQGFARLRAAGIAVT
SGICEQEALALNAGFVARMSRATPWLWLKLAASLDGRSALHNGVSQWITGEAARADGHAW
RARADVVLTGMGTVLKDDPQLTVRAVQTPRQPRKAVVDGRFQVPEHARLFDGTPAWVFTA
IRDDAKAARLADKNVEVVCLPDAGGQRVDLAAMMRWLAAQDCNEVHVEAGAGLSGALLAA
DCVDELLVYLAPVMLSDAAGMVQMPMLEHLDAARRFRFTDLVRVGEDVRLQARDHARWLA
LLASARRASEQ
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgcgccgcgccctggagcttgcccggggcgtgatctacaccacgtcgcccaacccacgc
gtgggctgcgtcatcgttcgcgacggacaggtattgggcgagggggcgacgcagcctgcg
ggcggaccgcatgccgaggtcatggcgctgcgtgcggcgcaagccggagggcatgacctg
gccggcgccacggtctttgtcacgttagagccctgcagccactacggccggaccccgcct
tgcgtcgacgccttggtggcggccgctccggcgcgggtggtggtggcgctgggcgacccc
aatccgcgtgtggcgggccagggcttcgcacgcctgcgcgcggcaggcatcgcggtcacc
tcgggcatctgcgagcaggaggcattggccctgaatgccggtttcgtggcgcgcatgagc
cgggccacgccctggttatggcttaagcttgctgcatcgctggacggccgcagcgcactg
cacaacggcgtgtcgcaatggattaccggcgaggccgcgcgtgcggacgggcatgcctgg
cgcgcgcgcgccgatgtcgtgctcaccggtatgggtacggtgttgaaggacgatccgcag
ttgacggtgcgcgccgtgcagacgccgcgtcagccgcgcaaagccgtggtggatgggcgg
tttcaggtgcctgagcacgcgcgcttgttcgatggcacaccggcctgggtgtttaccgcg
atccgggacgacgccaaggcggcgcgcctggcagacaagaatgtcgaggtcgtgtgcctg
cccgatgctggcggccagcgcgtggatctcgccgccatgatgcgctggctggcggcccag
gattgcaatgaagtgcatgtggaggcgggtgcgggattgtcgggcgcgttgctggctgcc
gattgcgtggacgaattgctcgtctacctggcgcccgtgatgctgagcgatgcggcaggc
atggtgcagatgcccatgctcgagcatctggatgcggcacgccgctttcgttttaccgat
cttgtccgggtgggcgaagacgtgcgcctgcaggcgcgcgatcacgcacgctggctggcg
cttctggccagcgcacggcgcgcctccgaacaatag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (28)   

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