KEGG   Bordetella holmesii ATCC 51541: D560_2672
Entry
D560_2672         CDS       T03052                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bho  Bordetella holmesii ATCC 51541
Pathway
bho03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bho00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D560_2672 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bho03019]
    D560_2672 (rnr)
   03016 Transfer RNA biogenesis [BR:bho03016]
    D560_2672 (rnr)
Enzymes [BR:bho01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     D560_2672 (rnr)
Messenger RNA biogenesis [BR:bho03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     D560_2672 (rnr)
Transfer RNA biogenesis [BR:bho03016]
 Prokaryotic type
  tRNA degradation factors
   D560_2672 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 Rrp44_S1 Gar1
Other DBs
NCBI-ProteinID: AHV94101
Position
2499923..2502343
AA seq 806 aa
MPAAPPDFDPDVPSREEILNALRTAGAPLAPAELAQRMGVEREATLVGFERRLAAMERDG
QLLPNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGQDIFLSPREMLKVLHGDRVLV
KPAGEYRGKPEGTIVEVIERRTNKLVGRFLHEHGLSIVAPEDQRIKHDILIPPGDTNGAQ
HGQVVSVEIIEQPTRHTQPLGKVFEVLGEIDDPGMEIEIAVRKFDVPVEFSEAARKQAAR
LPDVVRKSDLKHRVDLRDVPLITIDGEDARDFDDAVYCQPVDLGTGQRKRPGWRLLVAIA
DVSHYVKPGDAIDDDAIERGTSVYFPRRVIPMLPESLSNGLCSLNPNVDRLVLVCDMVIP
ATGAKAGTVTAYQFYNAVMHSQARTTYTSIWEALQQPGGPAAAALGKLLPDVQHLYELYQ
LLSQQRKKRGAIDFDTIETRIVCNELGRIEQIVPMVRNDAHKLIEECMLAANTCSADFMH
RSKHPGLYRIHEGPTPERLQALREFLRTQALSLGGGDTPTAKDYGEFLDTVRGRPDFPLL
QTMSLRSMQQAVYSPDNMGHFGLAYPAYSHFTSPIRRYPDLLTHRVIKALLQGQRYIPEL
QSQPLVIGRSQRDHEHAIWEKLGLLLSASERRADEASRDVEAWLKCWFVKERVGEDFSGT
VTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDSLHELRGERTGMRYRLTDKVQVQV
ARVDLEARRIEFRLVKGTSYESLRKQSTRNPDEPRRVKKAAAPKPAALKGQTAKQRRAEA
KKTNKVPPTPPQRPAEAAKKTPRGRR
NT seq 2421 nt   +upstreamnt  +downstreamnt
gtgcccgctgctccgccggactttgatccggacgtcccctctcgcgaagagattctgaat
gccttgcgcacggccggcgcgcctttggcgcctgccgaactggcgcagcgcatgggtgtc
gagcgcgaggcgaccctggttggctttgagcgccggctcgccgccatggagcgcgatggc
caattgttgcctaatcgcaagggcgtgctgttgctggccaccaaattggatttcgttgcc
ggtcgcgtacagggccatcgggatggctttggctttctcgtccgcgacgacggcgggcag
gatatctttctgtcgccgcgcgaaatgctaaaagtgctgcatggtgaccgtgtcctggtc
aagccggctggcgaataccgtggcaagccggaaggtaccatcgttgaggtgatagaacgc
cgcaccaacaagttggtgggccgtttcctgcatgagcacggcctgtccatcgtcgcgccc
gaagatcagcgcatcaagcatgacattctgatccctcccggcgataccaatggagctcag
catggacaggtggtgtcggtcgagattatcgaacagccgacccgtcacacgcagccgctg
ggcaaggtgttcgaggtcctgggcgagattgatgaccctggcatggaaatcgaaattgcc
gtgcgcaagttcgacgtgccggtggagttctcggaggcggcgcgcaagcaggccgcgcgc
ctgccagacgttgttcgcaaaagcgatctcaagcaccgtgtggatctgcgcgatgtgccg
ttgatcaccatcgatggtgaggacgcgcgcgacttcgacgatgctgtctattgccagccg
gttgatctgggcacggggcagcgcaagcgtcccggttggcggctgttggtggctatcgcc
gatgtcagccactatgtgaagccgggcgatgccatcgatgatgacgccatcgagcgtggt
accagcgtatatttcccgcgccgtgtcattcccatgctgcccgagtcgctgtccaatggg
ctgtgctcgctcaatccgaacgtcgatcgcctggtgctggtctgcgatatggtgattccg
gccacgggcgcgaaggccggcacggtcaccgcttatcagttctacaacgcggtcatgcat
tcgcaggcgcgcaccacctacaccagcatctgggaggctctgcagcagccgggtgggcca
gccgcggcggcgctgggcaagctgctgccggatgttcagcacctgtacgagctctatcag
ttgctgtcgcagcagcgtaagaagcgcggcgccatcgatttcgacaccatcgaaacgcgg
attgtttgcaatgagctcggccgtatcgagcagatcgtacctatggtgcgtaacgacgct
cacaagctcatcgaagagtgcatgctggcggccaatacttgctcggccgacttcatgcat
cgcagcaagcacccgggcctttaccgaatccatgagggccccacgccggagcggctgcag
gcgttgcgtgagtttctgcgcacccaggcgctgtcgctcggcggcggcgacacccccacg
gccaaggattacggcgagtttctcgatacggtgcgtggacggcccgactttccgctgttg
cagaccatgagcctgcgctccatgcaacaagcggtctatagcccggacaatatgggccac
ttcggtctggcctatccggcgtattcccatttcacttcgcccatccggcgctatcccgat
ctgctcacgcatcgcgtcatcaaggcgctgttgcaagggcagcgatatatccccgagttg
cagtcacagccgctggttatcggacgcagccagcgcgatcacgagcatgccatttgggag
aagcttggcctgctgctgtcggccagcgaacgccgcgccgacgaggcatcgcgcgatgtg
gaggcctggctcaagtgctggttcgtcaaggagcgcgtcggcgaagacttcagcggtacg
gtcacgggcgtggcgagttttggtattttcgtgacattggataccttgcacgtcgagggt
ctggtgcatgtttctgagctgggtggagagtacttccagttcaacgactcgctgcacgag
ttgcgcggagagcgcaccggcatgcgttatcggttgacggacaaggtgcaggtgcaggtg
gcgcgggtcgaccttgaggcccgaaggatcgagtttcgcctcgtcaagggcacgagctac
gaatccttgcgcaagcaaagtacgcgtaatccggatgagccgcgccgcgtcaagaaggcc
gctgcgcccaagcctgctgcgctgaaggggcagacggccaaacagcgccgcgccgaggcc
aagaaaaccaataaagtgccgcccacgccgccgcagcggcccgccgaagccgccaagaag
accccgcgtggccgacgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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