KEGG   Bacillus infantis: N288_19665
Entry
N288_19665        CDS       T02860                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit epsilon
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
bif  Bacillus infantis
Pathway
bif03030  DNA replication
bif03430  Mismatch repair
bif03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bif00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    N288_19665 (dnaE)
   03430 Mismatch repair
    N288_19665 (dnaE)
   03440 Homologous recombination
    N288_19665 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bif03032]
    N288_19665 (dnaE)
   03400 DNA repair and recombination proteins [BR:bif03400]
    N288_19665 (dnaE)
Enzymes [BR:bif01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     N288_19665 (dnaE)
DNA replication proteins [BR:bif03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     N288_19665 (dnaE)
DNA repair and recombination proteins [BR:bif03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     N288_19665 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HROB tRNA_anti_2 DUF1748
Other DBs
NCBI-ProteinID: AGX05809
UniProt: U5LD96
Position
complement(3614917..3618276)
AA seq 1119 aa
MSFIHLHVYSAYSLLTSTVSVEQLVARAKQKGFSAIALTDRNVMYGTVQFYKECLKHSIK
PIIGLCADIESAGGEKGPSPLVLLAQNQDGFQNLLKISSTLQTKADGGIPVKWLKHYSSG
LIALTPGLEGEIEQYIAGGEEEKALEAIRLYTEIFGKDRFYLAYQDHGLPEEKKINRKLK
ELSVNHGFQTAAANQVFYAEKEDAFAQECLLAIKNGDKLQDENRFRLQSDEYYLKTAEEM
SEVFTESTEALENTIKIMEQCNVMLELDKKHLPKYPVPEGDADTLLEELCWKGFAERYPE
ASEVHRQRLLYELGIIKKMKFSDYFLIVWDFIKFSRENGILTGPGRGSAAGSMVSYVLYI
TDADPIEHELLFERFLNPERISMPDIDIDFPDHRRDEVIRYVAKKYGELHVAQIITFGTL
AAKAAMRDTGRVFGLNAKELEQVSRLIPSRPGTNLKTAYKESEQLRAFTAESSLNKRLFE
TALKIEGLPRHTSTHAAGVVISEFPLVNVVPIQQGHEGVYLTQYSMEHLEAAGLLKMDFL
GLRNLSLIETILSSIQRKTGKKPDIKKIPLDDEKTYRLLSSGETTGVFQLESDGMRNVLK
KLKPTRFEDIVAVNALYRPGPMENIPSFINRKHGKEPISYPHPDLKPYLEKTYGVIVYQE
QIMQIASKMAGFSLGEADLLRRAVSKKQKDVLDRERAHFASGAVSSGYDEKTAQEVYDLI
VRFANYGFNRSHAVAYSFIAYQLAYLKANYPLNFMAALLSQASGNEDKLAQYIRELKHLG
LTLLPPSINSSGYSFQAESGGIRYSLAAVKGIGASVLKDVFHARRQKRFEDLFDFCIRVP
AKSATRKILEAFVHSGSFDEFGEDRAVLLATLDIAIEHAELVKPDESGQEDFFSEDEFSI
KPKYAENDPIRIEDKLQYEKEYLGLYLSDHPVSVYAASFASLGVTQLADMEPGSRNIRTA
AYLSEVKKIRTKKGEAMAFLSLNDQSGEMEAVVFPAVYKRDSALLKQGAILLLEGKAEER
DGKRQFIVNRAADMGQAAAEAGKHERTLYLKVPEDIETPEGLKELKAILGRNPGSVPVVL
HYAGSQKTIRLAEGNGADATEKLLKDLGSVLGTENVIIK
NT seq 3360 nt   +upstreamnt  +downstreamnt
atgtcatttattcaccttcatgtatatagtgcatacagcctgctgacaagtacggtttcg
gttgaacagcttgttgcgcgggcaaagcagaaaggcttcagcgccattgccttgacagac
cggaatgtaatgtatggtacggttcagttttacaaggaatgtctcaagcattctattaaa
ccgatcatcggcctttgtgcagatattgaatccgcgggaggggaaaaggggccgagccct
ttagtgctcctggcccaaaaccaggacggcttccagaacctcctgaaaatatcgagcact
cttcaaacgaaagcggacggggggatcccggtaaaatggctgaagcattattcctcaggg
cttattgcccttacaccgggcctggaaggagaaatcgaacagtatattgccggcggtgaa
gaagagaaggcgcttgaagccattcgcctctatacagagattttcggaaaagaccggttt
tatctggcctatcaggatcatggccttccggaagaaaagaagataaacagaaagctgaag
gaattgtctgtaaaccatggctttcagaccgctgcggcaaaccaggtgttttatgccgaa
aaagaagatgcttttgcccaggaatgccttctggccattaaaaatggcgataaactccag
gacgaaaaccgcttccgtcttcaaagcgatgaatattatcttaagacagcagaagaaatg
tcagaggtttttacagaaagcactgaagcactggagaacaccattaaaattatggagcag
tgcaatgtcatgctggagcttgataagaagcatctgccaaaataccctgtcccggagggg
gatgcggatacactgctggaagagctgtgctggaagggatttgcggagcgctatcccgag
gcttcggaagtccatcgccaacgccttctatatgagttaggcatcattaaaaaaatgaag
ttcagcgattattttctgattgtctgggatttcatcaaattctccagagaaaacggcatc
ctaactggccccggccggggatctgcggccggatccatggtgtcttacgtcctttatata
accgatgctgacccaattgagcatgagctcctgtttgagcgctttcttaatccggagcgg
atatccatgccagatattgatatagactttccggaccatagaagggatgaggtcatcaga
tacgtcgcaaaaaaatacggagagctccatgtggcccagattatcactttcggcacgctg
gcagccaaagcggcaatgcgggataccggaagggtattcggcctgaatgcaaaagagctt
gagcaggtttctcgcctgatcccgtcccgaccaggcacaaacctgaaaacagcctacaaa
gaatcagaacagctgcgggcgtttacggctgaatccagcctgaataagaggttatttgaa
acagcgctgaaaatcgaagggcttccaaggcatacatccacacacgctgcaggtgtggtt
atcagcgaatttccccttgttaatgtggttccaatccagcagggccatgaaggagtctat
ttgacgcaatactcaatggagcatctggaggctgccggccttttaaaaatggacttcctg
gggctgcgcaatctttcccttattgaaacgattttatcctccattcagcggaaaacagga
aagaaacctgatataaaaaagatccccctggatgatgaaaagacataccggcttcttagc
tccggggagacgacaggtgtcttccagcttgaatctgatgggatgcggaatgtactcaag
aagctgaagccgacccgctttgaagatattgtggcggtcaatgcactatacaggccggga
ccgatggagaatatcccatccttcattaacaggaagcatgggaaagagccgatttcttac
ccgcatccggatttgaagccgtatttagaaaaaacttacggagtcattgtctaccaggag
caaatcatgcagattgcttccaagatggccggcttctctttgggagaagcagatttgctg
agaagggctgtgagtaaaaagcagaaggatgtgctggaccgggagagggcccattttgca
tcaggtgctgtgagcagcggctatgacgagaaaacagctcaggaagtttacgacctgatt
gtgcgctttgcaaattacggctttaacagaagccacgctgtcgcctacagctttatcgct
taccagcttgcctatttaaaagctaattatcctttgaactttatggctgcactcctttca
caggcttcaggcaatgaagataagcttgcccagtatatccgtgagctgaagcatctgggg
ctcacgcttcttccgccatcaatcaattcgagcggctattccttccaggcagaaagcggc
ggcatccgctacagccttgcagcagtgaaagggataggcgcctctgtcctgaaggatgtc
tttcacgcccgaaggcagaagcgttttgaggatttgtttgatttttgcatcagggtacct
gcaaaatcagccacacgaaaaattctggaggcatttgtgcattccggcagcttcgacgaa
ttcggggaggaccgcgctgttttgcttgccactctggatatagcgattgagcatgcagaa
ctggttaagccggatgagtccggccaggaggatttcttctctgaagatgaattttccatc
aagccgaagtacgcggaaaatgaccccatccgcattgaagataagcttcagtatgaaaaa
gagtatctcggactttatctgtcagaccatcctgtttccgtttatgctgccagttttgcc
tccctcggtgtcacacagctggcagatatggaacctggcagccggaatataagaactgcc
gcttatctttcagaagtaaaaaaaatcaggacgaagaagggagaggccatggctttcctg
tccctgaatgaccagagcggagaaatggaggcagttgtattccctgcggtatataaaagg
gattctgcacttctgaagcagggagctatccttctcttggaaggcaaagccgaggagcgg
gatggaaagaggcagtttattgtgaaccgtgccgcagatatgggacaggcagctgcagaa
gcaggcaagcatgagaggaccttatatttgaaggtccctgaagatatagaaacacctgaa
ggcctgaaggagctcaaagctatcctggggaggaatcctggatcagttccggtcgtcctt
cattatgcaggatctcaaaagacgatccgcctggcagaaggaaacggagcagatgccaca
gaaaagctgctcaaagatctgggcagcgtgctaggcactgaaaatgtaattataaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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