KEGG   Blastomonas sp. RAC04: BSY18_2878
Entry
BSY18_2878        CDS       T04450                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
blas  Blastomonas sp. RAC04
Pathway
blas03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:blas00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BSY18_2878 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blas03400]
    BSY18_2878 (ligD)
Enzymes [BR:blas01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSY18_2878 (ligD)
DNA repair and recombination proteins [BR:blas03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BSY18_2878 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AOG01715
UniProt: A0A1B3N8M4
Position
complement(3049799..3052276)
AA seq 825 aa
MAKAADLLADYNAKRDFKRTPEPAGKVSKAAGNRFIVQKHDATRLHFDLRLEIDGVLKSW
AVTKGPSANPEDKRLAVRTEDHPMSYADFEGVIPQGAYGGGTVMLWDTGSWAPIAGKSAH
DIEEGHLHFTLDGQRMKGEWLLVRMKPRPGEKRENWLLRKIADRWAGGTDDLVGRALTSV
LSDRTMAQIAAGEEGLKPDLGAKPASTAKPASKRRSKGTPPKFRALQLATLVDAVPAGHD
WIHEIKYDGYRAAVAAAGSDVRIYTRNGLDWTDKFAPLVAHIAALDLPPCLIDGEIVAFD
ANGNPDFSALQAVLKRGKGAQDAKTELQFFAFDLIEQDGKSLTTLGNLERKERLEALLHD
AAPPIAVADHVIGAGERLYAAMCSAGQEGIISKRAESGYAGKRSTNWVKVKCTRRQEFVI
VGWNPSRAKGRPFASLLLAQHEGDALVYKGNVGTGFSADSMDELARSFAKLARKTAPLPV
EGAAARHAHWLKPELVAEIAFAEFTAGGVVRHASFLGLRGDKAARDVTPEVARPAPADHD
VVTITSRDRVIFPEAKKTKGDLADYYAAVAPVMVMHAARRPISLVRCPQGRAKACFFQKH
DSGSFGEHVHHISIREKDGGHEDYLYVEDAAGLLACVQMGTIEFHGWGSQIAAVEHPDRM
VFDLDPDEGLDFADVRKAALDIRGHLADIGLVSFAMLTGGKGVHVVVPLDPGHSWDAHKA
FARHFAEALSMAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAVMPYSARARPHAPVAVP
IGWEALAEAKSASQYTIDDSSLLLERAARSDLQGWGFAAQALPEY
NT seq 2478 nt   +upstreamnt  +downstreamnt
atggctaaggctgccgatctgcttgccgactataacgccaagcgcgatttcaagcggacg
cctgagcccgccggcaaggtgtcgaaggccgcaggcaaccgcttcatcgtgcagaagcat
gatgccacgcggctgcacttcgatctgcggctcgagatcgacggcgtgctcaagagctgg
gcggtcaccaaggggcccagcgccaatcctgaagacaaaaggctggcggtgcgcaccgag
gaccatccgatgtcgtacgccgatttcgaaggcgtgatcccccagggtgcctatggcggc
ggcacggtgatgctgtgggacaccggcagctgggcaccgatcgccggaaaaagcgcgcac
gacatcgaggaggggcatctccacttcacgctcgacggccagcggatgaagggcgaatgg
ctgctggtgcgaatgaagccgcgccccggcgaaaagcgcgagaactggctgctgcgcaag
atcgccgacagatgggccggtggcacggatgatctggttggccgcgcgctcaccagcgtt
ctcagcgaccggacgatggcgcagatcgctgcgggggaagaaggcctgaaaccagacttg
ggcgcaaagcctgccagcacggccaaacccgcatccaaacgccggtccaagggcacgccg
cccaagttccgtgccctgcagctggcgacattggtcgatgccgtccctgccgggcacgac
tggatccacgagatcaagtatgacggctatcgcgccgccgtcgccgcagcgggcagcgac
gtgcgcatctacacgcgcaacggactggactggaccgacaagtttgcgccgctggtcgcc
cacatcgccgcgctcgatctgccgccctgcctgatcgatggcgagatcgtcgcgttcgac
gccaacggcaaccccgatttctctgcgctgcaggccgttctcaaacgcggcaagggcgcg
caggacgcaaagaccgaattgcagttcttcgccttcgacctgatcgagcaggacggcaag
tcgttgaccacgctgggcaatctcgagcgcaaggaacggctcgaagcgctgctgcatgat
gccgccccgccgatcgcggtggccgatcatgtcattggtgccggagagaggctgtacgcc
gcaatgtgcagtgcggggcaggaggggatcatctccaagcgcgccgaatcgggctatgcc
ggcaaaaggtcgaccaactgggtcaaggtgaagtgcacccgccgccaggagttcgtcatc
gtcggctggaacccctccagggcgaaggggcggccgttcgcctcgctgctgctcgcgcag
cacgagggcgatgcactggtctacaagggcaacgtcggtacggggttcagcgccgatagc
atggacgagcttgcgcggagcttcgcgaaactcgcccgcaagaccgcgccgttgcccgta
gagggtgccgccgcccgccatgcgcactggctgaagcccgagcttgtcgccgagatcgcg
tttgcggaattcaccgcgggcggcgtggtccgccatgcgagctttctgggcctgcgcggc
gacaaggcagcgcgcgatgtgaccccggaggtcgcacggcccgcgccagccgaccatgat
gtggtcacgatcaccagccgcgatcgcgtcatcttccccgaagcgaagaagaccaagggc
gaccttgcggattattatgccgcggtcgctccggtcatggtgatgcatgctgcgcgccgc
ccgatcagcctggtgcgctgtccgcaggggcgcgccaaggcgtgcttcttccagaagcat
gattcgggctcgttcggcgagcatgtccaccatatcagcattcgcgagaaggacggcggg
cacgaagactatctgtatgtcgaggatgccgccgggctgctggcctgtgtgcagatgggg
acgatcgagttccacggctggggcagccagattgcggcggtcgagcatcccgaccggatg
gtgttcgatctcgatcccgacgagggtctcgattttgccgatgtcagaaaggccgcgctc
gatattcgcgggcatcttgccgacataggcctggtcagctttgcgatgctcaccggcggc
aagggcgtgcatgtcgtggtgccgctcgatcccgggcacagctgggatgcgcacaaggcc
tttgcgcgccactttgccgaagcgctcagcatggccgagcccgaccgctttgttgcaacc
atgagcaaggccaagcgcaagggcaggatcttcatcgactggctgcgcaaccagcggggc
agcacagccgtgatgccctattcggcccgcgcccgcccgcatgcgccggtggcggtgccg
atcggctgggaagcgctggcagaagcgaagagcgcgagccagtacacgatcgacgacagc
agcttgctgctcgagcgggcggccaggtccgaccttcagggctggggatttgcagcgcag
gccctgcccgaatactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (27)   

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