KEGG   Bifidobacterium longum DJO10A: BLD_0954
Entry
BLD_0954          CDS       T00707                                 
Symbol
uvrD3
Name
(GenBank) Superfamily I DNA and RNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
blj  Bifidobacterium longum DJO10A
Pathway
blj03420  Nucleotide excision repair
blj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:blj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BLD_0954 (uvrD3)
   03430 Mismatch repair
    BLD_0954 (uvrD3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blj03400]
    BLD_0954 (uvrD3)
Enzymes [BR:blj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BLD_0954 (uvrD3)
DNA repair and recombination proteins [BR:blj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BLD_0954 (uvrD3)
   MMR (mismatch excision repair)
    Other MMR factors
     BLD_0954 (uvrD3)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 DEAD AAA_30 XdhC_CoxI
Other DBs
NCBI-ProteinID: ACD98400
UniProt: B3DTD1
Position
complement(1100117..1104148)
AA seq 1343 aa
MSTFTPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVAGDMAGSTTATVSDRSFLKPAIFTYDAFFQTIVRQYGLLVGFDQNT
QPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSDAIGSAMIGAGCTSFDDA
INRVRQWDSAFINRLQQAVADEPMPEDEPKIPKIKRLKKDTDASWQAKLDDRAEHLHARC
TYHCGALLETTRKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRR
YSHVLLDEYQDTSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQ
DFHLSAGYKPFPLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDA
PEGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMP
EYQAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAA
DLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRG
DLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHN
PQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAP
VDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYH
ETADSWLTNPTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDDEVFGSMRE
FGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPS
VVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPE
GFFIGEHAAAYGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSS
LEQHQDAGPLLQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVTSLQARVG
GMNEREERLYWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPH
TGQDAGFVSREAMLADLAERERQCRKPSTRQPAVPQPTAQQSASAVSAASATSISSDNAT
ESKLVAWQRRLAESSWAKRIPAWTERAIVVDVPGVGLVNGKLDAVFIGGLDPSSTTARFT
VVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSIDATLYYVSEPDEGLRELHA
RAKTKQEILTELSSGIPEQSDND
NT seq 4032 nt   +upstreamnt  +downstreamnt
atgagcacgttcactcccagtgcggaacaggccgccatcatcgatgcgccagtcgatgct
gacgtattggtggttgccggtgccggttccggcaaaacctttacgatgacccaacgcatc
atcgcgcttatcaatcgaggtgtggcacctgaacgcatcctgggcctgaccttcacacgc
aaggccgcaggcgaactgctggaacgcgtctccgccgcagtggccggtgatatggcgggc
tctacgaccgccacggtgtctgatcggtcattcctcaagccggccattttcacgtatgac
gccttcttccagaccatcgtgcgccaatatggactgcttgtcggattcgatcagaacacg
caaccattgagcgcagccggagcgcttcaactggccaccgaagtcatcgacagtcacatg
gatctggcgttcagtgaggattttggcgccttctccagtttggcgaaccgtgttctggcg
ttgtcggatgccattggcagtgccatgatcggtgccggctgcaccagcttcgatgatgcg
atcaatcgagtacggcaatgggattcggcattcatcaatcgattgcaacaagccgttgca
gacgaacccatgcccgaggacgagccgaaaatccccaagatcaaacgactgaagaaagat
accgacgccagctggcaagccaagctcgatgaccgtgccgaacatttgcacgcccgctgc
acctatcattgcggtgcgctgctggagaccacacgcaaacgcgatattctgctccagctg
gtggaggcctatgcccaagccaagcgggaacgcaatatggccgaattctccgacttcacc
attgccgcgtatcagcttatcgagcgcttcccctccatcggagagcgtacgcgccgcagg
tacagccacgtgctgctcgacgaatatcaggacacctccaccacgcaggccgctctgctg
gcagcactgttccacgtggatgcgtcacagaggtccgccgtcaacgcggtgggtgatccg
ttccagtcgatttacgcatggcgtggtgccagccctggtgcattccgtatgttccagcaa
gatttccacctgtctgccggatacaagccattcccgctgtccgtcaccaggcgaaacagc
cgtatagtgctcgaagccgccaataatctcacgctgccgttgcgctccaatccgtcgcgt
ccttccagctcattgatgcgtgaggtcgatgtctcatcgctcgaccccatgcctgatgcc
cccgaaggaacattgggagtactgggcttcgccacggccgggcaggagatcgacgccgta
gtgcgtttctgcaagacggccatcgcacggcaccgttccgcagccgaacaacaggaacag
atgccgggcgaacagaaagcgccggtcgccgtgctgtttcggtccaaatcacatatgccc
gaatatcaggcggcattggaacaggccggattgaccacattcgtggtcggctattccgcg
ctgttggaacgtccggaaatccgcgatctgatggcgttgctgcacgtggccgccgaccac
accgatacgggatcgctgatgcgcttgctggccacgccacgattcaccatgtccgcagcg
gatttgaccatgttggcccgttttgctgaagaacagaacacggaacaacgcttccaagca
ttggtgcaggccggccttgcccaaccggatacaccagcgaatgaatgggcggctgtggtg
cgtgagtaccgcgatcaggtggccaatgcggtattcctgccagacgtattgctacgcggc
gacctggtaaaactgcttgaacggttgagcgcacacgggcgcaacgccataacccgggcc
gcggtgatgctccgtcaggtgcatgatgccgtcgggcggccactgggcgacgtgattcgc
gccggcatagaagcgttggatcttgacatcgacaccgtattggccggtgtgctgcataat
ccgcagcaccgcgccaatcccgctttggcgcatatgcctatggatgcgattgtggatttg
gtggatacgtacacgcaagagattgccgctgagcaaactccctcgttgcatgggttcatc
acatgggtggatcatctggcttcggtggaggatgaagccgccagtctccctgacgctccg
gtggatgtggaactgatgaccgtacaccagtccaaagggttggaatgggatgccgttgcg
gtagtggggcttaccgccgtcggattccccagcaatcagggcgaccatctcaagatcgtg
ctggacgagcaccatacgggaggcaccgagcaaggtcactggaccgcacccgaatatcat
gagaccgccgactcctggctcaccaaccccaccgccgtacccgtgcctatgcgtgccgat
gccggcattctgccgcgattcccccatgatgccgatgtggaagccgaccccatcgcatcg
ttggcggctttggatgatgtggagcttattgatgatgaagtgttcggctccatgcgcgaa
ttcggcgatggcgtggaagaagtggatgcatccggctggtatttgacgcaggcggaggaa
tatgggcgccggctgcatgccgacgaacgtcgattgatgtatgtggcgcttacccgtgcg
cgagaagatgccctgatgacctattgcgcctatacgggcgaatccgggcgggacccgtca
gtggtgcccaaaggctctcgcgccgctcagccatccaatttctggcttgaagtgcatgac
gcgctccaagcccgtgaacatgcgatatcggctcaggactgtgtggaacggctgcaagcc
gccaatgccgggaagcccatgctgatctcggcgcaaggcgaagcgattgccactcccgaa
gggttctttatcggagagcatgccgcggcatacggtgacgccgtggtgggggaggcatgg
cagacgccgattacgcagacggatgccgctgtcgaattgccgtggccggctaccctcagc
gacgcagtgcatgaacagctgtcacgtggcatcgatgttatcgccgcagattcctcgtca
cttgagcagcaccaagacgccggtccactgctgcaacgggcgcaattgctggtggacgac
gccgatttgatggccgatgccgccagcggccagtcgcttgatgaggcagtcaaagccaag
gcgcaacgcgttctggctgcaggacgccagaacgtgacaagcctgcaagcccgcgtaggt
ggcatgaacgaacgggaggagcgcctctactggcgtagcattatccgcccgattccgcgc
atatcgtctccggcggccgaggccggcacgcagttccatgcgtgggctgagcaattcatc
aatgccggtaagccggatgaagcggtactggcatatgaagccgaatcaagtatgccgcat
acaggtcaggatgcgggattcgtttcccgggaagccatgttggccgatttggccgaacgg
gagcggcaatgccgcaagccatccacacggcagcccgctgtcccacagcccacggctcaa
caatccgcatccgccgtatccgccgcctccgccacttccataagtagcgacaatgccacc
gagtccaagctggtggcgtggcagcgcagactggccgaatcatcgtgggccaagcgcatc
ccggcgtggacggagcgtgccatcgtcgtggacgtgccgggcgtgggcctggtcaatggc
aaactcgatgcggtattcatcggtggacttgacccgtccagcaccaccgcacgctttacc
gtggtcgactggaaaaccggtcgtcggcccaccaagccagacgacatcacccgcaaactc
gcccagctcgacatgtaccgactgctgctggcagcggtcgaaggtgtggaattggacagt
atcgacgccactctctactatgtcagtgagcccgacgagggcttgcgcgagcttcacgcc
cgcgcgaaaaccaaacaggaaatccttaccgagttgagctccggcattcccgaacaatct
gacaacgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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