KEGG   Priestia megaterium DSM 319: BMD_0072
Entry
BMD_0072          CDS       T01219                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bmd  Priestia megaterium DSM 319
Pathway
bmd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bmd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BMD_0072 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bmd03400]
    BMD_0072 (mfd)
Enzymes [BR:bmd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BMD_0072 (mfd)
DNA repair and recombination proteins [BR:bmd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BMD_0072 (mfd)
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF CarD_TRCF_RID Helicase_C ResIII RecG_dom3_C MFD_D3 UB2H
Other DBs
NCBI-ProteinID: ADF37018
UniProt: D5D967
Position
62123..65653
AA seq 1176 aa
MRGIRQQFEENKEIGAVVSSLEEGLKEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNL
YQAQKVYEDLLHLLPEKDVFLYPVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGVVVT
PLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVRGGI
IDIYPLTEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNQNEVAQGI
EELEAQLASTLQQVKNAALKATLTENIKGEIEQLRQGQLLENMFKYLSFFYESPASLLDY
LPEGGLVIFDETTRIQETSDQLETEEAEWITELLGQGQIVRDVQLSHKLPSLIQRVKHQF
LYLSLFLKHVSYTSPQNIINISCKQMQQFYGQMNLLKSEIERWKNANYTVVLLGADKERV
KKLEGVLADYDIDSSILDGNGQLVPGLVQIIEGDLQMGFELPMQKLAVLTEEELFKKRVK
KSKRRQKLSNAERIKSYSELNVGDYVVHVNHGIGRYLGMETLEINGNHKDYIHIKYEGSD
KLYVPVEQIDQVQKYVGSEGKEPKVYKLGGNDWKKVKRKVESSVQDIADDLIKLYAEREA
SKGYAFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDMEHERPMDRLLCGDVGYGKTEV
AIRAAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQQETIK
GLKNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYN
RVEDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDI
PNVNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKFN
VEMNLDLDAYIPDQYITDGRLKIEMYKRFRGIEALEDIQELQDEMIDRFGEYPAEVEYLF
KVAETKVYAMQNLVESILQSKQEISILLSEEASSTVDGQKLFMLGDQFGRMVSLGMEGKK
VKLVVNVKGLAQKEWLNIVYQLVKGVATVKKEQVTN
NT seq 3531 nt   +upstreamnt  +downstreamnt
ttgcgagggattagacagcaatttgaagaaaataaagaaattggagctgttgtcagcagc
ttagaagaaggtttgaaagaacagttagtaacgggaatttccggttcagctcgatctgta
ttaatggcactcttaaatgaggataaaaaataccctttattagtagtgactcataattta
tatcaagctcaaaaagtgtatgaagaccttttgcatcttttaccggaaaaagacgttttc
ttataccctgttaacgatttagttgctacagaagtggggattgcaagtccagaattaaag
gctcagcgaattgaagtactcaattattggagtcaacatacaggtggagtagttgtaaca
ccgcttgcaggaattcgaaagctgctgcctcctaaagcaagatgggagcaaacacagctg
ccgtttcaaatgggaattgacatcgacgttgatcattatttaaaaaggttagttgagttg
ggctatgagcgggcatctatggtttcagctccgggtgagtttagtgtgcgcgggggaatc
attgacatttatccgttaacagaagagctacctgtccgaattgaactatttgatacggag
attgattccattcgtacttttacaatcgaggatcaacgctctcaagagcagttaaaagaa
atttcaatcggtcctgctacggaaatcattgtgaaccaaaatgaagtggcccaaggaatt
gaagaactagaagcacagctggcttcgacgctgcaacaagtaaaaaacgcagcgctaaaa
gctaccttaacagaaaatattaaaggtgaaatcgaacagctgcgtcaaggtcagcttctt
gaaaatatgttcaagtatttatcattcttctacgaatcgcctgctagtttactagattat
ttaccagaaggcggccttgtcatctttgatgaaaccactcgaattcaagaaacgtctgat
cagcttgaaacagaggaagctgaatggataaccgaattattaggacaggggcaaattgtt
cgagacgttcaattatctcataagctcccatctcttattcagcgagtaaaacatcagttt
ttatacttatcgttatttttgaagcacgtatcgtatacgagtccgcaaaatattattaat
atttcatgtaagcagatgcagcagttttacggccaaatgaacttattaaaaagtgaaatt
gaacgttggaaaaatgctaattatacggtagtcctcttaggagcagataaagagcgcgtg
aaaaaacttgaaggtgtgctagcagattatgatattgattcatctattttagatggaaat
ggtcagcttgtgccaggtcttgttcaaattattgaaggcgatttacaaatgggctttgaa
ctgccgatgcaaaaattagctgttttaaccgaggaagaattgtttaaaaaacgggtaaag
aaatcaaagcgtcgtcaaaagctttccaatgcagaacgtattaaaagctattcagagtta
aacgtaggtgactatgtcgttcacgtgaaccacggtattggccgttatttaggaatggaa
acgttagagattaacggtaatcataaagattatatccatatcaaatatgaaggctctgac
aagctgtacgttcctgttgaacagattgatcaagtacaaaaatatgtaggctctgaaggg
aaagagccaaaagtatataaacttggcggaaatgactggaagaaagtgaaacgaaaagtt
gagtcttctgttcaagatatcgctgatgacttaattaaactgtatgcagagcgtgaagca
agtaaaggttatgcattttccccggatggcgatttacaaagagaatttgaaacagctttc
ccttatcaagaaaccgaagatcagcttcgttctgtacaagaaattaaaaaggatatggaa
catgaaagaccaatggatcgtttgctttgtggagacgttggatatggaaaaacagaagtg
gccattcgtgctgcatttaaagctgtgacagatggaaaacaagtggctattttagtgcca
accactattttagctcagcagcactatgaaaccatccgtgagcgttttcaagactatcca
atcaacattgggctattgagccgctttcgcagtcgtaaacagcagcaagaaacaattaaa
gggctaaaaaacgggaccgtagatgtggtgattggtacacatcgtttactatctaaagac
gtgatttataaagatttaggattgttagttatcgatgaagagcagcgttttggtgtaacg
cacaaggaaaaaatcaagcaaatgaaagcaaacgttgatgtccttacacttacagcaaca
cctattccacgaacattacatatgtctatgttgggcgtaagggatttgtctgttattgaa
acgccgcctgaaaatcgtttcccggttcaaacatatgtagtggagtataatccggtttta
gttcgtgaagcgattgagcgtgagttagcgcgtgatggccaagtttactttttatataat
cgcgtagaagatattgaacgaaaagcagaagaaatttcgatgctcgttcctgatgctagg
gtaacgtatgcccacggaaaaatgaatgaaaccgaactcgaagcggttatcttaagcttt
ttagaaggcgaatatgacgtgattgtgagtacaaccattatcgaaacgggagtagatatt
cccaatgtaaatacgcttattgtcaataatgctgataagatgggattatcacaactgtat
caattaagagggcgtgtaggtcgttcaaatcgtgtggcatatgcgtactttacgtatcac
aaagacaaagtactgacagaagtagctgaaaagcgtctgcaagctattaaagaatttacc
gaattaggttctggttttaaaattgctatgcgtgatctttcaatacgtggtgccggaaac
ttactgggtgctcagcagcatggatttatcgattctgtcggtttcgatctctactcgcaa
atgcttaaagaagcgatagaggaaagacgcgggtctgacggagaaagtgtgaaatttaat
gtggaaatgaatctggacttagacgcatatattcctgatcagtacattacagacggccgc
ttgaaaattgagatgtataagcgctttagaggaattgaagcactagaagatattcaagaa
ttgcaggatgaaatgattgatcgttttggagagtatccggctgaggttgagtatttgttt
aaagtagctgaaacaaaagtatatgcaatgcagaacttagtagaatctattcttcagtca
aaacaagaaatttctattctgttgtctgaagaagcgagctcaacggtagacggccaaaaa
ttattcatgctaggtgatcaattcggcagaatggtcagcttaggtatggaaggcaagaaa
gtaaaattagtggttaatgtaaaaggacttgctcaaaaagaatggctcaatattgtgtat
cagttagtaaaaggagtagccactgttaaaaaagaacaagttacgaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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