KEGG T00479: BMA10247

Burkholderia mallei NCTC 10247: BMA10247_1814

Entry

BMA10247_1814     CDS       T00479

Symbol

rne

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

bmn Burkholderia mallei NCTC 10247

Pathway

bmn03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bmn00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BMA10247_1814 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmn03019]
    BMA10247_1814 (rne)
   03009 Ribosome biogenesis [BR:bmn03009]
    BMA10247_1814 (rne)
Enzymes [BR:bmn01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BMA10247_1814 (rne)
Messenger RNA biogenesis [BR:bmn03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BMA10247_1814 (rne)
Ribosome biogenesis [BR:bmn03009]
Prokaryotic type
  rRNA processing factors
   BMA10247_1814 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1

Other DBs

NCBI-ProteinID:

ABO04992

Position

I:1796030..1799293

AA seq 1087 aa
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPAR
ERAERGERGEKAERGERGGDRNRNRRGGAAQQGGGRDQAAAGGGRAQAPRAEREGKETRE
PREGREARGGRDNREGREARETREAREPREQREPREAREQREARERAETVDAAEAPRGER
RERGERRKPAPHVATLETVNRGESAHAETAEKPLYALGAEAGVDADSNARDGEERRRRRR
GRRGGRREREDEVAGAVQAAEGSEGVTAEAEALEHAEHAQQRVAPVANQAPEHAAQAGAG
VAAAAAATVAAEAIAHVESGAKVEPQPAAEASAGDTEQAEAVPARSIEAPAQAASTGQAE
AVQAAPAHVTPATADVAREPAAPAETASAETTPAEIPPAEAAPAEAPAAEASEVAASAVA
SAPAPAPAAEPAPAAEPHRPAPVSAAPASAAPAEADAAREPAAVAEPHVPAAAATPTPAS
VATTPGVSLDTALAAAGLVWVNTDTDKLRAAQAAAAQIVQPVRVPRERKPLPPVDATPMQ
QVETTHR

NT seq 3264 nt +upstreamnt +downstreamnt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgatatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgagggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgcttaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcagcgtcgcaaagcggc
caccccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgagcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcgcgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtgcccctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcccgccagttacgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccagccctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggagaacaccgcggcgatccac
tgtcaggtgcccgtcgaggtgacggccttcctgctcaacgagaagcgccaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcgtcgtgctgattccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaacgaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgg
ccggcgccgagccccgcgccgcagcgccagagcgcgccggaagcggcggcgcccgtggcc
gccgcgcccgcgagcggcggcggtttcatgaaatggctgaagggcctgttcggcgcgcag
ccggctgcggtgcccgcaccggcgcccgccgcgcaggaaacggctgcgcgtccggcgcgc
gagcgcgcggagcgtggtgagcgcggcgagaaggccgagcgcggcgaacgcggcggcgat
cgcaaccgcaaccgccgcggcggcgccgcgcagcaggggggtggacgcgaccaggcggcg
gcaggcggcggccgcgctcaggcgccgcgcgccgagcgcgaaggcaaggaaacccgcgag
ccgcgcgaaggccgcgaagcacgcggcggccgggacaaccgggaaggccgcgaggcgcgc
gaaacccgcgaggcgcgcgagccccgtgaacaacgcgagccgcgcgaggcacgcgagcag
cgcgaagcgcgcgagcgcgccgaaacggtcgacgccgcggaagccccgcgcggcgagcgc
cgtgaacgcggcgagcgccgtaagccggccccgcatgtcgcgacgctcgaaacggtgaat
cgcggcgaaagcgcacatgcggaaaccgccgaaaagccgctgtacgcgcttggcgcggaa
gccggcgtcgacgcggattcgaacgcacgcgacggcgaagaacgccgccgccgccgccgt
ggccgccgtggcggccgccgcgagcgtgaagacgaagtcgcgggcgccgtgcaggcggcg
gaaggcagcgaaggcgtgacggccgaggccgaagcgctcgagcacgccgagcacgcgcaa
caacgcgtcgcgccggtagcgaaccaagcgcccgagcatgccgcgcaagcgggtgcgggc
gtcgcggcggcagccgccgcgaccgtcgcagccgaggcgattgcgcatgtcgagagcggc
gcgaaggtcgagccgcaaccggcggccgaggcatccgccggcgatacggaacaggccgag
gcggtgcccgcgcggtccatcgaagcaccggcgcaagcggcttcgacgggtcaagcggaa
gccgtgcaagccgcaccggcacacgtgacgccggccacggccgacgtcgcgcgcgagccg
gccgcgcctgccgaaactgcgtctgccgaaacgacgcctgctgaaatcccgcctgccgaa
gccgcgcccgccgaagcaccggccgcggaagcgtccgaagtggccgcgagcgcggtcgct
tcggccccggccccggccccggccgcggagcccgcgccggccgccgagccgcaccggccg
gcgcccgtctcggccgcccccgcctcggccgcgccggccgaagcggacgccgcgcgcgag
ccggccgccgtcgccgagccgcacgtgccggcggccgccgcgacccctaccccggcttcg
gtggcgaccacgccgggcgtgagcctcgatacggcgctcgcggccgccggccttgtctgg
gtcaataccgacacggacaagctgcgcgccgcacaggccgccgccgcgcaaatcgtgcag
cccgtgcgcgtgccgcgcgaacgcaagccgctgccgcccgtcgacgcgacgccgatgcag
caggtcgagacgacgcaccgctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

Download RDF

DBGET integrated database retrieval system