KEGG   Bombyx mori (domestic silkworm): 101739631
Entry
101739631         CDS       T02817                                 
Name
(RefSeq) RNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
bmor  Bombyx mori (domestic silkworm)
Brite
KEGG Orthology (KO) [BR:bmor00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:bmor03016]
    101739631
Enzymes [BR:bmor01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     101739631
Transfer RNA biogenesis [BR:bmor03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    101739631
 Prokaryotic type
   tRNA splicing ligases
    101739631
SSDB
Motif
Pfam: RtcB DUF6471
Other DBs
NCBI-GeneID: 101739631
NCBI-ProteinID: XP_004924840
UniProt: A0A8R2AGW5
Position
10:complement(8514848..8517536)
AA seq 506 aa
MVVRQYNEEIKYLEKINPYCWRIKKGFQPNMNVEGVFYVNSTLEKLMLEELRNCCRPGMS
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIFD
KYAAGKMGIESIGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIK
SVEGQDYLKAMSAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKVE
EHVVDGKLKTLLVHRKGSTRAFPPNHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLETMGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKTVKLRPIAVIKG
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggttgtaaggcagtataatgaagaaattaaatatttggaaaaaattaatccatattgt
tggagaattaaaaaaggcttccaaccaaatatgaatgttgaaggagtgttttacgttaac
agtacacttgagaaactaatgttggaggagcttaggaattgttgtagacctggtatgtca
ggtggattccttcctggtgtaaaacagatagctaatgttgcagctttaccgggaattgta
ggccggtcagtgggattgcctgatgttcattctggatatgggttcgctataggaaatatg
gcagcttttgatatggatgatcccaaatctatagtatctccaggaggcgtaggattcgat
ataaactgtggtgttcgtttattgagaacaaatttacatgagaaggatgttctacctatt
aaggaacaattagctcagagcttgtttgaccatatacctgttggagttggctccaagggt
attattccaatgaatgcacgtgatttggaagaagcattagaaatgggtatggactggtct
ctaagggaaggttatgtttgggccgaagataaggaacactgtgaagaatatggaagaatg
ttgaatgctgatccatcaaaagtcagtctcagagcaaagaaaagaggtctacctcaactg
ggcacactaggagctggaaatcattatgcagagattcaagttgttgatgaaatatttgat
aaatatgctgctggaaaaatgggtattgaaagtattggtcaagtttgtgtgatgattcac
tctggaagtcgtggttttgggcatcaagtagcaactgatgctttagtgcaaatggagaaa
gctatgaagagagataacatagaaactaatgatagacaacttgcatgtgccaggataaaa
tctgttgaaggtcaagattatcttaaagctatgtctgctgctgccaattttgcttgggtg
aaccgtagctcaatgacattcttgacccgtcaagcttttgcgaagcaatttaaaatggca
cctgatgatcttgacatgcatgtcatatatgatgtgtctcataatattgccaaggttgaa
gaacatgtagtagatgggaaattgaaaactctactagtacataggaagggctcaactaga
gcattcccaccaaatcatccattaatacctgtggattatcaactaactggtcagcctgta
cttattggtggtacaatgggaacctgcagttatgtactaactggtactcatcaaggaatg
acagaaacgtttggatccacatgccatggtgctggtcgagctctgtctagagccaagtct
agaagaaacatagactacaaagaagttctaaacaaacttgaaactatgggtatttccatt
agagttgcatctccaaaactagtaatggaagaggcaccagagtcatacaagaatgtaaca
gatgtcgtagatacatgtcatgctgctggtattagcaaaaaaactgttaaattaagacca
attgcagttataaaaggatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (57)   

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