KEGG   Burkholderia mallei SAVP1: BMASAVP1_A1747
Entry
BMASAVP1_A1747    CDS       T00457                                 
Symbol
vacB
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bmv  Burkholderia mallei SAVP1
Pathway
bmv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BMASAVP1_A1747 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmv03019]
    BMASAVP1_A1747 (vacB)
   03016 Transfer RNA biogenesis [BR:bmv03016]
    BMASAVP1_A1747 (vacB)
Enzymes [BR:bmv01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BMASAVP1_A1747 (vacB)
Messenger RNA biogenesis [BR:bmv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BMASAVP1_A1747 (vacB)
Transfer RNA biogenesis [BR:bmv03016]
 Prokaryotic type
  tRNA degradation factors
   BMASAVP1_A1747 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1 HTH_12 CSD RcsD_ABL
Other DBs
NCBI-ProteinID: ABM51648
Position
I:complement(1729376..1732066)
AA seq 896 aa
MRLPISPPGQVCAAKTAIIDGQTNLSTFFRGPSASRRARRNTRRAARSPQRRVLEWGGMS
GAPVRLRLPRSRKPNATRKIIDKPLSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSI
KRQEREGFFRRVAAMERDGQIRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDD
LFLPNAEMQKVMHNDRVLARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAP
EDKRISHDILVTQNAKKAKVGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEIAV
RKYGVPHEFGAQALGEAAALPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPA
AVGRGEGFRLIVAIADVSHYVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLN
PQVDRCVLACDMIINARGDIKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELM
PHLQHLYGVYKALFVARQKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECML
AANVCAADFLKRNKHPGLYRVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMA
HIRDRPDAQMLQPMLLRSMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYA
ILSGKKYTPKSPEGVELNTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRA
DEASRDVEAWLKCYFMRDKLGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQ
YDEVKNELRGERTGIRYRLSDRVRVQVSRVDLDARKIDFRLVRETPVKAPRPASAVAAEA
GAGGPRVRALPPAEGAARRKKAASAPSAAVKEARAARKKGAASKPAAKKARSRKKY
NT seq 2691 nt   +upstreamnt  +downstreamnt
gtgcgtctaccaatttcgccacctgggcaggtgtgtgctgcaaagaccgccattatagac
ggccaaacgaacctgtcaacattttttcgagggccgtccgcatcgcggcgcgcgcggcgc
aacacgcggcgtgcggcccgttcgccgcagcggcgggtgttagaatggggcggcatgagc
ggcgcgcccgttcggctccgcttgccgcggtcgcgcaagccaaacgcaacgagaaaaatc
atcgacaagcccttgagcaagtatccgtatcccatcccgagccgcgaagagattctcggc
gtgctgcgcacgagcgacgcgccgcttgcggcgaacgacatcgccgaagcgctgtcgatc
aagcgtcaggagcgcgaaggatttttccggcgcgtcgccgcgatggagcgcgacggccag
atccgtctcgacaagcgcggtcattatcagctgacgcatccgtccaacttcgtcgcgggc
cgcgtgcaaggccaccgcgacggctacggcttcgtgattcgcgacgacgggcaggatgat
ctgttcctgccgaacgccgagatgcaaaaggtcatgcacaacgaccgcgtgctggcgcgg
atcgtcggctacgatcggcgcggccggccggaagggcacgtcgtcgaggtgaccgagcgg
gcgaacaagcgcgtgatcgggcgcctcctgaacgagaacggcgcgctcatcgtcgcgccc
gaggacaagcggatcagtcacgacatcctcgtcacgcagaacgcgaagaaggcgaaggtc
gggcaggtcgtcgtcgtcgagctcaccgatttcccgagccgtcattcgcagccgctcggc
cgcgtctgcgaggtgctcggcgatatcgacgatcccggcatggagatcgagatcgcggtg
cgcaagtacggcgtgccgcacgaattcggcgcgcaagcgctcggcgaggccgcggcgctg
ccggacaaggtgcggcccgcggatctgcgctaccgcgtcgacttgcgcgacgtgccgctc
gtcacgatcgacggcgaggacgcgcgcgacttcgacgacgccgtgtactgcgagcccgcc
gcggtcggccgcggcgagggcttccggctcatcgtcgcgatcgcggacgtgtcgcactac
gtgcagccaggcagcccgctcgacgccgacgcggtcgaacgcagcacgtcggtctatttc
ccgcgccgggtgattccgatgctgccggagaagctgtcgaacgggctctgctcgctgaat
ccgcaggtcgatcgctgcgtgctcgcgtgcgacatgatcatcaacgcgcgtggcgacatc
aaggcgtatcagttctatccggccgtgatccactcggccgcgcggctcacgtacaccgaa
gtggccgcggtgctctcgaacacgaaggggccggaggccgcgcgccgcgccgagctgatg
ccgcacctgcagcacctgtacggcgtctacaaggcgctcttcgtcgcgcggcagaagcgc
ggcgcgatcgacttcgacacgaccgagacgtacatcgtctgcaacgcacagggcaagatc
gagcagattctgccgcgccagcgtaacgacgcgcatcggctgatcgaggaatgcatgctt
gccgcgaacgtctgcgcggccgatttcctcaagcgcaacaagcacccgggcctctaccgc
gtgcacgcggggccgacgcccgaaaagctcgagaatctgcgcgcgttcctgcgcgacatg
gggctcacgctgggcggcggcgacacgccgcatgcgagcgattacgcggcgctgatggcg
cacatccgcgaccggcccgacgcgcagatgctgcagccgatgctgctgcgctcgatgcag
caggcggtctacagtccggacaacatcggccacttcggtctcgcgtacgacgcgtacgcg
cacttcacgagcccgattcgccgctatcccgatctgctcacgcaccgcgcgatctacgcg
atcctgtccggcaagaagtacacgccgaagtcgccggaaggcgtcgagctgaacaccgcg
ctgtcgccgcgcgcgcgcgcgatgcagcgcgaggacgacgaggcgcgcggccgcgcgcgg
tcgaacgcggcgatctgggaggagctcgggctgcactgttcgtccaacgagcggcgcgcg
gacgaagcgtcgcgcgacgtcgaggcatggctcaagtgctatttcatgcgcgacaagctc
ggcgaggaatacggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctc
gatgcgcttttcatcgaaggcctcgtgcatgtgaccgagctcggcgccgattattttcag
tacgacgaagtcaagaacgaactgcgcggcgagcgcacgggcattcgctaccggctgtcc
gaccgcgtgcgcgtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgatttccgc
ctcgtgcgcgagacgcccgtgaaggcgccgcgcccggcatcggcggtggcggccgaagcg
ggcgcgggcgggccgcgtgtgcgcgcgctgccgcccgccgaaggcgccgcgcgacgcaag
aaggccgcgagcgcgccgagcgcggcggtgaaggaggcccgggcggcccgcaagaagggc
gccgcgtcgaagccggccgcgaagaaggcgcgttcgcgcaagaagtactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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