KEGG   Brassica napus (rape): 106345734
Entry
106345734         CDS       T04128                                 
Name
(RefSeq) probable RNA-binding protein 19
  KO
K13126  polyadenylate-binding protein
Organism
bna  Brassica napus (rape)
Pathway
bna03015  mRNA surveillance pathway
bna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106345734
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106345734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106345734
   03041 Spliceosome [BR:bna03041]
    106345734
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     106345734
   mRNA cycle factors
    Stress granule specific factors
     106345734
Spliceosome [BR:bna03041]
 Complex C
  Other components
   Complex C specific factors
    106345734
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2 RRM_5
Other DBs
NCBI-GeneID: 106345734
NCBI-ProteinID: XP_013640353
Position
A6:1300757..1306784
AA seq 838 aa
MLVRTIVIGRTLVLKNPKPIKGRPKRDYCYTNNLAFFSLKSQLSREIRRRCFNFPMASSS
IANSLGKRKPEDDLDTEPVLRRHKSEAKETRSESQVELLETKSDESALNSAMETIEGLDE
DPDFVEEAAGPPNKKLFLDKLSSETEISDVIDFFKDVGQVVGVRLMLNHKGGRVDKRVGR
RVENRLGLGFVEFASSDEAKKALKMKTGEYWSRNKVFLKVAATSPPPKYCVDHNVWYEDY
LQREGLLIEEFAAGEGLDETPEEPAIPKKTLFVGRFSPQTKPIDIIDFFKDVGGVSYVRL
IGDHTGKHVGYGFVDFASVNDANKALQHKNGESLHDCKIFLELANNGATYLPPKYCLDYK
VWFEESLPVEGLDETPDFAEATVVPKKTLFISHLSHQKTIISDIIDFFKDAGEVVRVRLI
LDQYGEHAGCGFVEFASSNEANKALQQKNGEYLHNSSIFLDVANNEFAENLPPKHCIDHK
VWFNEDLLQSESFMIEEDKTTPPDFAENVLLVANLSPQTTKISHIIKFFRNVGDVVSVRL
IVNRECKHVGYGFIVFASPYEAQEALKMVNGAYMDDHKIMLMKGLDQTPDFVEAVATSRS
KTLYVANLPREKTEISHIIDFFKDVGQVVHVRLICNLMGNHVGTGFVEFASADEAKKALE
KKNGEHFHRRKIFLDVPKKAQGRFKYCIDHKVWYEDYLRQESLLIGADETPDFAEENAVR
RKTLFVANLSHHNNKLQISNISKIFKDVVQVVRVRLIVDHCGEHVNCGFVEFASANEAQK
ALRHRKRRCKLIFYEAEIAATYPFRHKYNFEQKLWYEDKLRREYLKTSPNLKIAFTDK
NT seq 2517 nt   +upstreamnt  +downstreamnt
atgttagttcggacaattgtcattggacggacactagtgcttaaaaaccctaaaccaata
aaaggccggcccaaacgagattattgttatacaaataacttggctttcttctctctcaag
tctcaactctccagggaaataaggcgccgctgtttcaacttcccgatggcgagttctagc
atagctaattcactgggtaagcgaaagccggaagatgatttggacactgaaccggttctg
aggagacataaatccgaggccaaggagacaaggagtgaaagccaggtcgagttgctggag
acaaagtctgatgagtcagctttaaactcagccatggagacaattgaaggacttgatgaa
gatccagattttgttgaggaagctgcaggaccacctaataagaagctctttcttgacaaa
ctctctagcgaaactgaaatatcagatgtcatcgatttcttcaaagatgttggacaagtt
gttggtgttcgacttatgcttaaccacaagggcggccgtgtggacaaacgtgtgggcagg
cgtgtggaaaatcgtctgggtttaggctttgttgaatttgcttcttctgacgaagctaag
aaggcgctgaaaatgaagaccggtgaatattggagccgtaacaaggtttttcttaaagtg
gcagctacatcccctccacccaagtattgcgtagatcacaatgtgtggtacgaagactac
cttcaacgggaaggccttctgatagaagaatttgccgcaggggaaggacttgatgaaact
cctgaggaacctgccataccaaaaaaaacgctctttgtgggccgtttctctccccaaact
aaaccaatagatatcatcgatttcttcaaagatgttggaggagtttcttatgttcgactt
ataggagaccacacgggcaagcatgtgggctacggctttgttgattttgcttctgtgaat
gatgcaaataaggcgctgcaacataagaatggtgaatctttgcacgactgtaaaattttt
cttgaactggctaataatggagcgacgtaccttccacccaagtattgcctagattacaag
gtttggttcgaagaaagccttccggttgaaggacttgatgaaactcccgattttgctgag
gcaactgtcgtaccaaagaagactctctttatttcccatctctcacaccagaaaactatc
atatcagatatcatcgatttcttcaaagatgctggggaagttgttcgggttcgacttatt
ctagaccagtatggtgagcatgcgggctgtggctttgttgagtttgcttcttctaacgaa
gcaaataaggcgctgcaacaaaagaacggtgaatatttgcacaacagcagcatttttctt
gatgtggcgaataatgaatttgcagagaaccttccacccaagcattgcatagatcacaag
gtttggttcaatgaagacttgcttcaaagtgaaagttttatgatagaagaagataagacg
acacctccggattttgctgagaacgtactccttgttgccaacctctctccacaaacaact
aaaatatcacatatcatcaagttcttcagaaatgttggagacgttgtcagtgttcgactt
attgttaaccgcgagtgtaagcatgtgggctatggctttattgtgtttgcttctccttat
gaagcacaggaggcgctgaaaatggtgaatggtgcatatatggacgatcataagattatg
ttgatgaaaggacttgatcaaactcccgattttgttgaggcagttgccacctcaagaagt
aagacgctctatgttgccaatctccctcgcgaaaaaactgaaatatcacatatcatcgat
ttcttcaaagatgttggacaagttgttcatgttcgacttatttgcaacctcatgggcaat
catgtgggcactggctttgttgagtttgcttctgctgatgaagcaaagaaggcgctggaa
aagaaaaacggtgaacattttcaccgtcgcaagatttttcttgatgttcctaagaaggct
caaggccgattcaagtattgcattgatcacaaggtttggtacgaagactaccttcgacaa
gaaagccttttgataggagctgacgaaactcccgattttgctgaggaaaatgccgttcga
agaaagacactctttgttgccaatctttctcaccacaataacaaattgcagatttcaaat
atttccaaaatcttcaaagatgttgtacaagttgttcgtgttcgacttatcgtagaccac
tgtggtgagcatgtgaactgtgggtttgttgagtttgcttctgctaatgaagcacagaag
gcgctacgacaccggaaaagaagatgtaagcttattttctacgaggctgaaatagctgct
acgtaccctttccgacacaagtacaactttgaacaaaagctttggtacgaggacaagctt
cgacgagaatatttgaagacctccccgaatctgaagatcgccttcactgacaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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