KEGG   Brassica napus (rape): 106423004
Entry
106423004         CDS       T04128                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
bna  Brassica napus (rape)
Pathway
bna03018  RNA degradation
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106423004
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106423004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106423004
   03041 Spliceosome [BR:bna03041]
    106423004
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106423004
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106423004
Spliceosome [BR:bna03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106423004
 Complex C
  U2 snRNP components
    106423004
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C LSM14 DUF1256
Other DBs
NCBI-GeneID: 106423004
NCBI-ProteinID: XP_013719246
Position
A10:complement(1004075..1005276)
AA seq 93 aa
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttttcgtactttaaggatttggtgggacaagaagtgacggttgagctgaag
aacgatttagcaatcagagggacacttcattcagttgatcagtacctcaacatcaagctc
gagaacactcgtgttgttgatcaggacaagtaccctcacatgttgtcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtgcagttacctcctgatggagttgatgttgat
ttacttcacgatgcagctagaagagaggccagaggtggatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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