KEGG   Brassica napus (rape): 11542107
Entry
11542107          CDS       T04128                                 
Symbol
rpoC1, BRNAC_p012
Name
(RefSeq) RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bna  Brassica napus (rape)
Pathway
bna03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    11542107 (rpoC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bna03021]
    11542107 (rpoC1)
   03400 DNA repair and recombination proteins [BR:bna03400]
    11542107 (rpoC1)
Enzymes [BR:bna01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     11542107 (rpoC1)
Transcription machinery [BR:bna03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     11542107 (rpoC1)
DNA repair and recombination proteins [BR:bna03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      11542107 (rpoC1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 11542107
NCBI-ProteinID: YP_005089943
UniProt: D1L8M9
Position
Pltd:complement(19886..22713)
AA seq 680 aa
MIDRYKHQQLRIGLVSPQQISAWATKKIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVIGDEKEDSQFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFT
TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRR
KDFLVRRMELAKHFIRTNIEPEWMILCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVI
YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA
SNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYMKEPFFCNSYDAIGAYRQKRINLDS
PLWLRWQLDQRVIASKEVPIEVHYESFGNYHEIYAHYLIVRSVKKQTFCIYIRTTVGHIS
FYREIEEAIQGFSQACSYDT
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgatcgatcggtataaacatcaacaactccgaattggattagtttctcctcagcaaata
agtgcttgggccactaaaaaaatacctaatggagagatagttggagaggtgacaaaaccc
tatacttttcattacaaaaccaataaaccggaaaaagatggattattttgtgaaaggatt
tttgggcctataaagagtggaatttgcgcttgtggaaattatcgagtgatcggagatgaa
aaagaagactcgcaattttgtgaacaatgtggagttgaatttgttgattctcggatacga
agatatcaaatgggatacataaaactgacatgtcctgtaactcatgtatggtatttgaaa
cgtcttcctagttatattgcgaatcttttagataaacctcttaaagaattagaaggtcta
gtatactgcgatttttcttttgctaggcccataacgaaaaaacctactttcttacgatta
cgaggttcatttgaatatgaaattcaatcctggaaatacagcatcccacttttttttact
actcaaggtttcgatatatttagaaatcgagaaatttctactggggcgggtgctatccga
gaacaattagccgatttagatttgcgaattattatagaaaattcgttggtagaatggaaa
caattaggagaagaaggtcccacggggaatgaatgggaagatcgaaaaattgtaagaaga
aaagattttttagttagacgtatggaattagctaagcattttattcgaacaaatatagaa
ccggaatggatgattttatgtctcttaccggttctgcctcccgagttgagacccatcatt
cagatagaagggggtaaactgatgagttcagatattaatgaactctatagaagagttatc
tatcggaacaatactcttactgatctattaacaacaagtagatctacaccaggggaatta
gtaatgtgtcaggaaaaattggtacaagaagccgtggatacacttcttgataatggaatc
cgtggacaacccatgagggatggtcataataaggtttacaagtcattttcagatgtaatt
gaaggaaaagagggaagatttcgcgagactctgcttggcaaacgggtcgattattcgggg
cgttcggtgattgtcgttggaccctcactttcattacatcgctgtggattgcctcgcgaa
atagcaatagagctcttccagacatttgtaattcgtggtctaattagacaacatctggct
tcgaacataggagttgctaagagtcaaattcgtgaaaaaaagccgattgtctgggaaatc
cttcaagaagttatgcaggggcatcccgtattactgaatagagcacctactctacataga
ttaggcatacagtcattccaacccattttagtggaaggacgcactatttgtttacatcca
ttagtttgtaaggggttcaatgcagactttgatggggatcaaatggctgttcatgtgcct
ttatctttagaagctcaagcagaggctcgtttacttatgttttctcatatgaatctctta
tctccagctattggagatcccatttctgtaccgactcaagatatgctgattggactctat
gtattaacgagcggcactcgtcgaggtatttgtgcaaacagatataatccatgtaatcga
aaaaactatcaaaatgaaagaatttacgaaacaaactataagtatatgaaagaacccttt
ttttgcaattcctatgatgcaattggagcttatcggcagaaaagaatcaatttagatagt
cctttgtggcttcggtggcaattagatcaacgcgttattgcttcaaaagaagttcctatc
gaagttcactatgaatcttttggtaactatcatgagatttatgcacactatctgatagta
agaagtgtaaaaaaacaaactttttgtatatatattcgaaccacagttggtcatatttct
ttttatcgagaaatcgaggaagctatacaaggtttttctcaagcttgttcatatgatacc
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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