KEGG   Brassica oleracea (wild cabbage): 106294350
Entry
106294350         CDS       T04124                                 
Name
(RefSeq) cell division control protein 48 homolog A
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    106294350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106294350
   03009 Ribosome biogenesis [BR:boe03009]
    106294350
   04131 Membrane trafficking [BR:boe04131]
    106294350
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:boe04147]
    106294350
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     106294350
Ribosome biogenesis [BR:boe03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    106294350
Membrane trafficking [BR:boe04131]
 SNARE
  SNARE associated proteins
   Others
    106294350
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    106294350
Exosome [BR:boe04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   106294350
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N CDC48_2 AAA_16 AAA_2 AAA_5 AAA_14 AAA_22 AAA_33 TIP49 RNA_helicase AAA_18 AAA_17 AAA_28 nSTAND3 Mg_chelatase ATPase_2 Parvo_NS1 IstB_IS21 Viral_helicase1 Vps4_C Zeta_toxin ABC_tran AAA_7 AAA_24 NB-ARC NACHT TsaE DUF815 ResIII UFD1 Zot
Other DBs
NCBI-GeneID: 106294350
NCBI-ProteinID: XP_013585358
UniProt: A0A0D3CLL4
Position
C5:complement(43118378..43121814)
AA seq 808 aa
MSNPAESSDSKPKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDT
ILIKGKKRKDTICIALADESCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHI
LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV
APDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHIALGNSNPSALRETVVEVPNVSWD
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNI
FKACLRKSPIAKDVDINALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSEN
PEAMEEDMDDVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFETN
AGSGATTGVADPFATSAAAAADDDDLYN
NT seq 2427 nt   +upstreamnt  +downstreamnt
atgtcgaacccagctgaatcttcagactcgaaaccgaagaaggatttcagtactgctatt
cttgagaggaagaagtctccgaacagactcgtcgtcgatgaggccatcaacgatgataac
tccgttgtgtctctccaccctgctaccatggagaagctccagctcttccgtggtgatacc
attctcatcaagggtaagaaaaggaaggacaccatctgcatcgctcttgctgatgaatcg
tgtgaggagccaaagatcaggatgaacaaagtggtcaggtctaacttgagggttagactt
ggtgatgttatctctgttcaccaatgccctgatgtcaagtacggaaagcgtgtgcacatc
ttgcctgttgatgacactgttgaaggagtcactggaaacctctttgatgcttacctcaaa
ccttatttcttggaggcataccgtccggtgaggaagggcgatctcttcctagtgagagga
ggaatgaggagtgtggagtttaaagtcattgagacggatcctgctgagtactgcgtggtt
gctccggacactgagattttctgtgagggtgagccagtcaagagagaggatgaagaaagg
cttgatgaagtgggttatgatgatgttggtggagtcaggaagcagatggctcagatcagg
gagcttgttgagcttcccttgaggcaccctcagctgttcaagtcaattggtgttaagcca
ccgaagggaattttgctttatggaccacctgggtctggaaagactttgatcgctcgtgct
gttgctaacgaaacaggtgccttcttcttctgtatcaatgggcctgagatcatgtccaag
ctggctggtgagagtgagagcaacctcaggaaagcgtttgaggaggctgagaagaatgct
ccttcgatcatattcattgatgagatcgactctattgcaccgaaaagggagaagacgaat
ggagaggttgagaggaggattgtgtctcagctccttacgcttatggatgggctgaaatct
cgtgctcatgttattgtcatgggagcaaccaatcgccccaacagtatcgacccggctttg
agaaggtttggaagatttgatagggagattgatattggtgttcctgatgagattggacgt
cttgaagttctcaggatccatacaaagaacatgaagcttgctgaagatgttgatctagaa
aggatctcaaaggacacacacggttatgtcggtgctgatcttgcagctctgtgcactgaa
gctgccctgcaatgcatcagggagaagatggatgtaattgatttggaagatgactccata
gatgctgaaatcctcaattccatggcagtgaccaatgaacacttccacattgctctcggc
aacagcaacccatctgcacttcgtgaaactgttgtggaggttcccaatgtttcttgggat
gacattggaggtcttgagaatgtcaagagagagctccaggagactgttcaatacccagtc
gagcacccagagaagtttgagaagttcggtatgtctccatcaaagggagtccttttctac
ggtcctcctggatgtggtaaaacccttttggccaaagctatagccaacgagtgccaagca
aacttcatcagtgtcaaaggccctgagcttctcaccatgtggtttggagagagtgaagca
aatgtccgtgaaatctttgacaaggcccgtcagtctgctccatgtgttctcttctttgac
gagctcgactccattgcgactcagagaggaggtggaagcggaggtgatggtggcggtgca
gcggatagagtcctgaaccagcttttgactgagatggatggaatgaacgccaagaagact
gtcttcatcatcggagcaaccaacagacccgatattattgattctgctcttctccgtcca
ggaaggctcgaccagctcatttacattccactgccagacgaggattcccgtctcaatatc
ttcaaggcctgcttgaggaagtcacccatcgctaaagatgtagacatcaacgctctcgct
aagtacacacagggattcagtggtgctgatatcactgagatttgccagagggcttgcaag
tacgccatcagagaaaacatcgagaaggacattgaaaaggaaaagaggaggagcgagaac
ccagaagccatggaggaagatatggatgatgtatcagagataaaagctgcgcactttgag
gagtcgatgaagtatgcacgcaggagtgtgagtgatgcagacatcaggaagtaccaagcc
tttgctcagacgctgcagcagtctagagggtttggttccgagttcaggttcgagactaat
gctggttcaggtgctaccactggagtcgctgatccttttgccacgtctgcagctgctgct
gcggacgatgatgatctctacaattaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (34)   
   Pfam (34)   
All databases (48)   

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