KEGG   Brassica oleracea (wild cabbage): 106318142
Entry
106318142         CDS       T04124                                 
Name
(RefSeq) DNA damage-binding protein 1a
  KO
K10610  DNA damage-binding protein 1
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03420  Nucleotide excision repair
boe04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106318142
  09124 Replication and repair
   03420 Nucleotide excision repair
    106318142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:boe04121]
    106318142
   03400 DNA repair and recombination proteins [BR:boe03400]
    106318142
Ubiquitin system [BR:boe04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     106318142
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      106318142
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      106318142
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 106318142
NCBI-ProteinID: XP_013611464
UniProt: A0A0D3E7Z9
Position
C9:complement(22988960..22994998)
AA seq 1088 aa
MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGETQDFLFIVTERHKFCVLQWDAESSELVTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL
YQDNKDARHVKTYEVSLKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGLVHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYTNLGPIVDFCVVDLE
RQGQGQVVTCSGAFKDGSLRIVRNGIGINEQASVELEGIKGMWSLKSSVDEAFDTFLVVS
FISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR
DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHTVLEYEVSCLDINPI
SDNPNYSQLASVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCSFEGISYLLCAL
GDGHLLNFQLDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSYMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH
QEQTRTFGICSLGNQTNAEESEMHFVRLLDDQSFEFMSTYPLDAFEYACSILSCSFTDDK
NVYYCVGTAYVLPEENEPTKGRILVFIVEDAKLQLIAEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDTYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLG
EFVNRFCHGSLVMRLPDSEIGQIPTVIFGTVNGMIGVIASLPQEQYAFLEKLQSSLRKVI
KGVGGLSHEQWRSFNNEKRTVEARNFLDGDLIESFLDLSRNKMEEISKSMNVQVEELCKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagctcatggaactacgtcgtcacggctcacaagcccaccagtgtcactcactcgtgc
gtgggaaacttcaccagtccccaagagctcaacctcatcgtcgcgaaatgtactcgaatt
gagatccatttgcttaccccacaaggccttcagcctatgctggatgttcctatatatgga
aggattgctactttggagttgttcaggccccatggcgaaacacaagactttttgttcatc
gtaactgagagacacaaattctgtgttcttcagtgggatgctgagtcctccgagcttgtc
acaagagcaatgggggatgtttctgatcgtataggccgaccaacagacaatggtcagatt
ggcataatagatccagattgtagattaattggactccacctgtatgacggcttgttcaag
gttataccatttgacaataagggacagctcaaggaagcttttaatatcaggctggaggag
ttgcaggttctggatatcaagttcctgtttggatgtgcaaagcccacaattgcagtactt
tatcaggacaacaaagatgctcgtcatgttaaaacatatgaagtctctctaaaagataag
gactttgtcgagggtccatggtcacagaacaatctcgacaatggtgctgacttactgatt
cccgtaccaccacctctctgtggcgtccttattattggtgaagaaacaattgtctattgc
agtgctaatgcattcaaagcaataccaatacgaccttccatcactaaagcatatggaaga
gttgatgttgatggctctaggtatcttcttggtgaccatgctggactggttcacctgctt
gttataacacacgagaaagaaaaggtcactggcctaaaaattgagctcctgggtgaaacg
tccattgcatccactatatcataccttgacaatgccgttgtctttgtcggctcaagctat
ggcgattctcagctagtaaagctaaatctacatcctgatgcgaaaggctcatatgtagaa
gtcttggagaggtataccaacctggggcctattgtcgacttctgtgtagtcgacctcgag
agacaagggcaaggccaggttgtaacttgttctggggcatttaaggatggttccctccgc
atagttcgcaatggcataggaatcaatgaacaggcgtctgtggaacttgaaggcatcaag
ggaatgtggtcgttgaaatcttcagttgatgaagccttcgacacattcctcgtggttagc
tttatcagtgaaactcgcatattagccatgaaccttgaggatgaactggaagaaactgag
attgagggcttcttgtcccaagtccagactttgttttgccatgatgctgtgtacaatcag
cttgtacaggttacctcaaattctgttagactagtcagctctacaactagagaattgcgg
gatgagtggcatgccccagctggattcactgttaatgttgcaaccgcaaatgccagccag
gttcttctggcgactggaggtgggcatttggtttatctagaaattggagatgggaaattg
acagaagtgcaacatactgttcttgagtacgaggtttcttgccttgacatcaaccccatc
agcgacaatcctaactacagtcagctagcttcggttgggatgtggacagatataagcgtc
aggattttttccctgccagaactgactcttattacaaaagagcaactaggaggagagatc
attccccgttctgttcttctctgttcattcgaagggatatcttacttgctctgtgctctc
ggagatggtcatcttttgaacttccagttggacacaactactggtcaattgaaagacaga
aagaaagtatcacttgggactcagcctataactctgcgtacgttttcatctaaaagcgcc
acacacgtcttcgctgcatcagatagaccaaccgtaatctatagcagcaataagaagctg
ttatacagcaatgtcaatcttaaagaagttagttatatgtgtcctttcaactctgctgct
tttcccgacagtttggcgattgccagagaaggtgaactcacgattggaaccattgatgat
attcagaagcttcacatacgcactattcctctgggagagcatgctcgtcgaatctgccat
caggaacagacacgtacatttggtatctgcagtttgggaaaccagacaaatgctgaagaa
tctgaaatgcattttgttcgtctgttggacgaccaatccttcgagtttatgtcaacttat
cccttggatgcgtttgaatacgcttgctccatactaagctgctccttcaccgacgacaag
aatgtctattactgtgttggaaccgcatatgttttaccggaagaaaacgaaccaaccaag
ggaaggatattggtatttatagtagaggatgcgaaactgcaacttatcgctgagaaagaa
accaaaggagctgtgtactctctcaatgcctttaatggaaagcttctcgctgctatcaat
cagaagattcagttatacaagtggatgctgcgtgatgatggcactcgtgaattgcagtct
gaatgtggacatcacggacacattctagctctctatgtacagacccgtggagactttatc
gttgttggtgatctcatgaaatcgatctccttgcttatctataagcacgaggaaggtgca
attgaggaacgagctcgggactacaatgctaactggatgtctgctgttgagatactcgat
gatgatacctaccttggcgctgagaacaatttcaatctgttaacggtgaagaagaacagt
gaaggtgctactgatgaagaacgagggaggttagaagtagttggggagtatcacctcggg
gaattcgttaacagattctgccatggatcgctcgtgatgaggctgcctgattcagagatc
ggtcagatcccaactgttattttcggtacagtcaatggaatgattggagtcattgcttcg
ctgccacaagaacagtatgctttcttggagaagttgcagtcgagtttgaggaaagtgatc
aaaggagtagggggactgagccacgagcagtggagatcgtttaataacgagaagagaacc
gtggaggcgaggaactttttggatggggacttgatcgaatcgtttctggatctgagtagg
aacaagatggaggagatatctaaatccatgaatgttcaggtggaagaattgtgtaagaga
gttgaagagctcactaggcttcactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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