KEGG   Bosea sp. RAC05: BSY19_3162
Entry
BSY19_3162        CDS       T04462                                 
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bos  Bosea sp. RAC05
Pathway
bos03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BSY19_3162
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bos03021]
    BSY19_3162
   03400 DNA repair and recombination proteins [BR:bos03400]
    BSY19_3162
Enzymes [BR:bos01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BSY19_3162
Transcription machinery [BR:bos03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BSY19_3162
DNA repair and recombination proteins [BR:bos03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BSY19_3162
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid RnfC_N ApbA_C
Other DBs
NCBI-ProteinID: AOG06195
UniProt: A0A1B3NLH6
Position
complement(3321372..3325568)
AA seq 1398 aa
MKQEVMNLFGQQPVQQAFDAIKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKFKGVICEKCGVEVTLARVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLMDMPLKDLERILYFESYVVIEPGLTPLKDRQLLSEEEYVRCQEEYGADTFTA
MIGAEAIREMLRALDLDQINADLKHEIATTTSELKPKKLMKRLKIIEAFQQSGNKPEWMV
MTIIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSTTVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGLPIIVPSQDIVLGLYYLSIVSDGEPGQGKIFGDFGELEYALH
EKVVTLHSKIKYRWTGVGADGKDYTKIYDTTPGRVILSTALPKHPAMTFDVSNRLMTKKE
ISGMIDAVYRGCGQKESVIFCDRIMSLGFTHAFKAGISFGKDDMVVPENKWEIVDTTRAL
AKDYEQQYQDGLITQGEKYNKVVDAWAKCSDKLAQEMMLRISTVKKDEHGRDKPINSIYM
MSHSGARGSPAQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLDVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIISETDCGSESGIKMRAIIDAGQVVASLGIRILGRSA
AEDVTDIDGNILVPKGTMIEESHIEKINAAGVQEVKIRSVLTCATKNGVCATCYGRDLAR
GTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATIADQSFTESNFEGTVKIRNRNLA
RNSDGDLIAMARNIAIVIVGPDGAERAVHRVQFGSKLRVDEGDKVKRGQRLIEWDPYSRP
ILAEVDGTVGYEDLVDGMSITETTDEATGISKRVVIDWRGSARTSDLRPALTVHGPDGKV
AKLARGGEARYILPVEGIISMEPGASIKAGDVLARVSTDSAKTRDITGGLPRVAELFEAR
RPKDAAIIAEKSGVIGFGKDYKNKRRVTLTPHDGSEVLEYLIPKGKHIHLQDGDVVETGD
YILDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVGINDKHIEVIVRQMLQKVEITD
GGDTDILTGDQVDRIELQEINAKMAEEGKKPASGVPVLLGITKASLQTRSFISAASFQET
TRVLTEAAVNGKYDTLEGLKENVIVGSLIPAGTGAQVARIKQVATRRDDLIVGQKADAAA
KAAATAAKAVEAALPAAE
NT seq 4197 nt   +upstreamnt  +downstreamnt
atgaagcaagaggtcatgaaccttttcggccagcagccggtgcagcaggcgttcgacgcg
atcaagatctcgatcgcgtcgcccgaaaagatcctgtcctggtcgtatggcgagatcaaa
aagccggagaccatcaactaccggacgttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
ttcaagggcgtcatctgcgagaagtgcggcgtcgaagtcacgctcgcccgcgtccggcgc
gagcgcatgggccatatcgagctcgccgccccggtcgcgcatatctggttcctgaagtcg
ctgccctcgcgcatcggcctgctcatggacatgccgctcaaggacctcgagcgcatcctg
tatttcgagtcgtatgtggtcatcgagccgggcctgaccccgctcaaggaccgtcagctg
ctctcggaagaagagtatgtccgctgccaggaagagtatggcgccgacaccttcaccgcc
atgatcggcgcggaagccatccgcgagatgctgcgcgcgctcgacctcgaccagatcaac
gccgatctcaagcatgagatcgcgacgacgacgtcggagctgaagcccaagaagctgatg
aagcgcctcaagatcatcgaggcgttccagcagtcgggcaacaagccggaatggatggtg
atgaccatcatcccggtgatcccgcccgatctgcgcccgctggtgccgctcgacggcggc
cgcttcgcgacctcggacctgaacgatctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcgcctgatcgagctgcgcgcgcccgacatcatcatccgtaacgagaagcggatg
ctgcaggaatcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtcgtcggt
cccgagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctatgcgcgcctcgacgccaagggctactcgaccacggtcaagcaggccaag
aagctcgtcgagaaggagaagccggaggtctgggacatcctggacgaggtcatccgcgag
catccggtgatgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgag
ccgacgctgatcgagggcaaggcgatccagctgcacccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctggaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcacccggcgaacggcctgccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactacctctcgatcgtctcggac
ggcgagccgggccagggcaagatcttcggtgacttcggcgaactcgaatacgcgctgcac
gagaaggtcgtgacgctgcattcgaagatcaaataccgctggaccggcgtcggcgccgac
ggcaaggactacaccaagatctacgacaccacgccgggccgcgtgatcctctcgaccgcc
ctgcccaagcacccggccatgaccttcgacgtcagcaaccgcctgatgacgaagaaggag
atttccgggatgatcgacgccgtctatcgcggctgcggtcagaaggaatcggtgatcttc
tgcgaccgcatcatgtcgctgggcttcacccacgccttcaaggccggcatctccttcggc
aaggacgacatggtcgtgccggagaacaagtgggagatcgtcgacacgacccgtgcgctc
gccaaggattacgagcagcagtaccaggacggcctgatcacccagggcgaaaagtacaac
aaggtcgtcgatgcctgggccaagtgctccgacaagctcgcccaggagatgatgctgcgc
atctcgaccgtgaagaaggacgagcacggccgcgacaagccgatcaactcgatctacatg
atgagccactcgggggcgcgcggttcgccggcgcagatgaagcagctcgcggcgatgcgc
ggcctgatggccaagccctcgggcgagatcatcgagagcccgatcatctcgaacttcaag
gaaggcctcgacgttctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcc
gatacggcgctgaagacggccaactctggctatctgacccgccgtctcgtcgacgtggcg
caggacgccatcatctccgagaccgattgcggttcggagagcggcatcaagatgcgcgcc
atcatcgacgccggccaggtcgtggcttcgctcggcatccgcattctgggtcgctccgcg
gccgaggacgtcacggatatcgacggcaacatcctcgtgccgaagggcacgatgatcgag
gaaagccatatcgagaagatcaacgccgccggggtccaggaggtgaagatccgctcggtg
ctgacctgcgccaccaagaacggcgtctgcgcgacctgctatggccgcgatctggcccgt
ggcacgcccgtcaacatgggcgaggccgtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggtacgcagctcaccatgcgcaccttccacatcggcggcgcggcaacgatcgccgac
cagtccttcacggagtcgaacttcgaaggcacggtcaagatccgcaaccgaaacctcgcc
cgcaactcggatggcgacctgatcgcgatggcgcgcaacatcgccatcgtcatcgtcggg
cccgacggcgccgagcgggcggtccatcgcgtccagttcggctcgaagctgcgggtcgac
gagggcgacaaggtcaagcgcggccagcgcctgatcgagtgggatccctattcccgcccg
atcctggccgaggtcgacggcaccgtcggttacgaggatctggtcgacggcatgtcgatc
accgagacgaccgacgaggcgaccggcatctccaagcgcgtcgtcatcgactggcgcggt
tcggcgcggacctcggacctgcgcccggcgctgaccgtgcacgggccggacggcaaggtg
gcgaagctcgcccgcggtggcgaagcccgctacatcctgccggtggagggcatcatctcg
atggagcccggcgcctcgatcaaggccggcgacgtgctggcgcgtgtctcgaccgactcg
gccaagacccgcgacatcaccggcggtctgccgcgggtggccgagctgttcgaggcccgt
cgtcccaaggacgccgcgatcatcgccgagaagtcgggcgtgatcggcttcgggaaggac
tacaagaacaagcggcgcgtcacgctcaccccgcatgacggctccgaggtgctcgagtac
ctgatcccgaagggcaagcacatccatctccaggacggcgacgtcgtggagacgggcgac
tacatcctcgacggcaacccggccccgcacgacatcctggcgatcaagggcgtcgaggag
ctggcggcttatctggtgaacgagatccaggaggtctatcgcctccagggcgtcggcatc
aacgacaagcacatcgaggtcatcgtccggcagatgcttcagaaggtcgagatcacggat
ggcggcgacaccgacatcctgaccggcgaccaggtcgaccggatcgagctgcaggagatc
aacgcgaagatggcggaggagggcaagaagcccgcatccggcgtccccgtgctgctgggc
atcaccaaggcgagcctgcagacccgctccttcatctcggcggcgtcgttccaggagacc
acccgcgtcctcaccgaggcggcggtcaacggcaagtacgacacgctggaaggcctcaag
gagaacgtcatcgtcggctcgctgatcccggccggcaccggcgcccaggtcgcccgcatc
aagcaggtggccacgcgtcgcgacgatctcatcgtcggccagaaggcggatgcggcggcc
aaggccgcggccaccgccgccaaggctgtcgaggcggcgctgcccgccgccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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